Archive for the ‘PubMed’ Category
The National Library of Medicine began keeping separate statistics on partial retractions in December 2006 and reporting them on the MEDLINE Key Indicators page when a journal identified an article as partially retracted. In 2006, NLM expected that partial retractions would be a new designation that publishers would be using. These were cases when some aspect of the article, such as a table, chart, image, etc., was determined to be incorrect, but the overall methodology or conclusion(s) of the paper were not affected. Since 2006, only 42 articles have been designated as “partially retracted.” In addition, the Committee on Publication Ethics (COPE) Retraction Guidelines state that partial retractions make it difficult for users to know which parts of an article are or are not reliable or the correct status of the article.
Beginning in October 2016, NLM will discontinue the identification of partial retractions in MEDLINE/PubMed. Previously, the Retracted Publication designation was added as a Publication Type to the citation for the article, which also triggered the Retracted Article banner on the Abstract display in PubMed, and Retraction of Publication was used as the Publication Type for the notice citation. NLM also linked the citations using a “Partial retraction in” label on the article citation and a “Partial retraction of” label on the notice citation. Instead, this type of notice will be treated as a published erratum. NLM will no longer use the retraction-related Publication Types on these citations, and the Retracted Article banner will no longer appear on the Abstract display; the notice citation will have Published Erratum as the Publication Type. The citations will continue to be linked, but will use an “Erratum in” label on the article citation and an “Erratum for” label on the notice citation, as is the case for other errata/correction notices. NLM has edited the existing 42 pairs of citations to reflect the new policy and the “Errata” Fact Sheet has been edited to reflect the new policy.
Louis W. Sullivan, MD, US Secretary of Health and Human Services (1989–1993), gave a 90-minute presentation about his life story, and racial disparities and medical care on October 4, A Personal Perspective on Race, Opportunity and the US Health System, which was archived for future viewing. Dr. Sullivan grew up in rural Georgia during the period of legally-sanctioned and enforced racial segregation, which impacted him, his family, and the black community. He was inspired to become a physician when, at age 5, he met the only black physician in Southwest Georgia. After becoming a hematologist and professor of medicine at Boston University School of Medicine, he went on to found the Morehouse School of Medicine in Atlanta, followed by an appointment as US Secretary of Health and Human Services in the administration of George H.W. Bush.
Dr. Sullivan developed initiatives to increase racial, ethnic, and gender diversity in the US Department of Health and Human Services and in the nation’s health workforce. Throughout his career, he has worked to improve the effectiveness of the US health system and the diversity of its workforce. The elimination of disparities in health care, which exist between whites and the nation’s underserved minorities, is an ongoing priority of Dr. Sullivan. He’ll discuss progress to date and remaining challenges.
On Wednesday, October 19, 11:00am – 12:00pm PDT, NLM will host the first session of a new Insider’s Guide to Accessing NLM Data series of webinars, beginning with Welcome to E-utilities for PubMed. The webinar series will promote more powerful and flexible ways of accessing NLM data, starting with an introduction to the Application Programming Interfaces (APIs) for PubMed and other NCBI databases. The series is geared toward librarians and other information specialists who have experience using PubMed via the traditional Web interface, but now want to dig deeper. This class will start with the very basics of APIs, and then move on to showing how to get started using the E-utilities API to search and retrieve records from PubMed. The class will also showcase some specific tools and utilities that information specialists can use to work with E-utilities, helping to prepare for subsequent Insider’s Guide classes. The session will conclude by looking at some practical examples of E-utilities in the real world, and hopefully inspire you to get out and put these lessons to use!
Does your collection include abstracting and indexing titles produced in cooperation with NLM, such as Hospital Literature Index and/or its successor Hospital and Health Administration Index, Index to Dental Literature, or International Nursing Index, all of which had ceased publication by the year 2000? In general, the NLM-derived citations in these publications are available in MEDLINE/PubMed. However, all of these publications also contained separate sections for monographic materials, which may not be available in the NLM collection. Therefore, NLM advises librarians that if access to the monographic materials in these tools are important at your institution, then retain these old print indexes in your collection. More details about each publication are available in this FAQ.
Following the latest biomedical literature can be a challenge, but NCBI’s new PubMed Journals resource will help you keep up-to-date.
Use PubMed Journals to:
- Easily find and follow journals of interest.
- Browse new articles in your favorite journal(s).
- Keep up-to-date with a Journal News Feed containing new arrivals, news links, trending articles, and important article updates (retractions and more!).
To follow a journal, you’ll need to be logged in to your NCBI account. PubMed Journals is an experiment of PubMed Labs, NCBI’s product incubator for delivering new features and capabilities to NCBI end users.
The National Network of Libraries of Medicine Training Office (NTO) is offering three free online PubMed CE classes in September in a series called PubMed for Librarians. Each class is 90 minutes long and recorded for archival access. Each class is meant to be a stand-alone module. The classes include:
- Introduction to PubMed: September 7, 2016 (9AM PDT)
- MeSH: September 14, 2016 (9AM PDT)
- Automatic Term Mapping: September 21, 2016 (9AM PDT)
Visit the NN/LM Training Office PubMed for Librarians page to register and for a description of all three classes.
The following National Library of Medicine (NLM) TOXNET databases now provide a link to an NLM PubMed search for the past five years of publications:
The PubMed (mobile version) results will appear in a new tab.
The project NLM 4 Caregivers is designed to increase awareness of NLM resources among family caregivers who actively seek health information online using social media tools such as Facebook, Twitter, blogs, and listservs, for discussing and exploring health issues. NLM 4 Caregivers discusses a wide variety of resources for searching and managing medications, such as PillBox and DailyMed, tools for locating clinical trials (ClinicalTrials.gov), and tools for accessing both consumer health information (MedlinePlus) and the latest biomedical research (PubMed).
NLM 4 Caregivers shares health resources relevant to caregivers through many mediums, such as:
On July 7, NN/LM PSR presented Saving Time with PubMed Subject-Specific Queries! for the NLM Express webinar series. Kate Flewelling, Health Professions Coordinator, NN/LM Middle Atlantic Region, provided some tips and tricks for preformulated PubMed searches on drugs, health information technology, public health and other topics.You can view the webinar by visiting our Distance Learning page or by clicking on the YouTube video player below.
Note: To switch to full screen, click on the full screen icon in the bottom corner of the video player. To exit the full screen, press Esc on your keyboard or click on the Full screen icon again. If you have problems viewing full screen videos, make sure you have the most up-to-date version of Adobe Flash Player.
The National Library of Medicine’s LinkOut filters feature provides PubMed users with connections to web-accessible resources, including full-text articles, consumer health information, and supplementary data related to a PubMed citation. PubMed users can access information for over 5,700 Hazardous Substances Data Bank (HSDB) chemical substances via LinkOut. HSDB focuses on the toxicology of potentially hazardous chemicals.
To set up LinkOut to retrieve HSDB information:
- If you don’t already have a free MyNCBI account, create one;
- In the Filters box on your MyNCBI account page, click the “Manage filters” link;
- Click on LinkOut from the “Select Category” option;
- Click on the + next to the Chemical Information option;
- Then click on the + next to the Toxicology option;
- Check the two boxes next to HSDB–this saves these options.
Then run a search:
- Log into your MyNCBI account and go to PubMed;
- Run your search;
- On the upper right side of the results page find “Filter your results;”
- Click on the HSDB link;
- Then click on a result;
- Click on the HSDB icon. The link takes you to the HSDB record for chemical(s) mentioned in the article.
Please note that LinkOut is not available for citations marked as “In process.”