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Archive for the ‘NCBI’ Category

NCBI Webinar: PubMed for Clinicians in November

On November 9, NLM staff will show health care professionals how to search PubMed for the most relevant and recent literature, explore specific clinical research areas, set up email alerts and more.

Date and time: Wednesday, November 9, 2016, 10:00-11:00am PST

Visit the PubMed for Clinicians registration page to register. After registering, you will receive a confirmation email with information about attending the Webinar. After the live presentation, the Webinar will be uploaded to the NCBI YouTube channel. Any related materials will be accessible on the Webinars and Courses homepage.

October Midday at the Oasis Recording Now Available!

On October 19, NN/LM PSR presented NLM Drug Information Services for the Midday at the Oasis monthly webinar. Patrick McLaughlin, from MEDLARS Management, covered a wealth of NLM websites. He covered MedlinePlus, PubMed Health, DailyMed, Dietary Supplement Label Database, Pillbox, RxImage, TOXNET’s HSDB and LactMed, and PubChem. For terminologies, he showed RxNorm, RxNav, RxClass, and UMLS. Last but not least, the Drug Information Portal was highlighted! You can view the webinar by visiting our Midday at the Oasis Archives page or by clicking on the YouTube video player below.

screen capture of Youtube controls with full screen icon encircled
Note: To switch to full screen, click on the full screen icon in the bottom corner of the video player. To exit the full screen, press Esc on your keyboard or click on the Full screen icon again. If you have problems viewing full screen videos, make sure you have the most up-to-date version of Adobe Flash Player.

New Webinar Series: Insider’s Guide to Accessing NLM Data

On Wednesday, October 19, 11:00am – 12:00pm PDT, NLM will host the first session of a new Insider’s Guide to Accessing NLM Data series of webinars, beginning with Welcome to E-utilities for PubMed. The webinar series will promote more powerful and flexible ways of accessing NLM data, starting with an introduction to the Application Programming Interfaces (APIs) for PubMed and other NCBI databases. The series is geared toward librarians and other information specialists who have experience using PubMed via the traditional Web interface, but now want to dig deeper. This class will start with the very basics of APIs, and then move on to showing how to get started using the E-utilities API to search and retrieve records from PubMed. The class will also showcase some specific tools and utilities that information specialists can use to work with E-utilities, helping to prepare for subsequent Insider’s Guide classes. The session will conclude by looking at some practical examples of E-utilities in the real world, and hopefully inspire you to get out and put these lessons to use!

University of Michigan Offers Live Streaming of NCBI Discovery Workshops October 4-6

Remote site registration is available for a series of three three-hour NCBI Discovery Workshops hosted by the Taubman Health Sciences Library at the University of Michigan on October 4-6, with instructors Peter Cooper, Ph.D., and Wayne Matten, Ph.D. The sessions will be streamed using BlueJeans. The workshops are:

  • Tuesday, 10/4, – Navigating NCBI Molecular Data Using the Integrated Entrez System and BLAST
  • Wednesday, 10/5, – A Practical Guide to NCBI BLAST
  • Thursday, 10/6, – EDirect: Command Line Access to NCBI’s Biomolecular Databases

NCBI Web Site Permanent Redirect to HTTPS Begins November 9

green padlock

To improve security and privacy, and to comply with a Federal government mandate, NCBI is moving all of its Web sites and services, including Web APIs, to HTTPS only by September 30, 2016, which was subsequently extended to November 9. At that point, HTTP traffic for GET and HEAD requests will be redirected. All other requests will be rejected. This change will provide users with greatly increased privacy and security on the NCBI site. To prepare for this change, NCBI ran a series of tests, which are now completed.

NCBI to Retire Leiden Open Variation Database (LOVD) on September 30

NCBI is retiring the Leiden Open Variation Database (LOVD) on September 30, 2016. LOVD has been used to capture information about novel human variants. Past submitters of human genetic variations to LOVD are encouraged to transfer their information to the ClinVar database. To add new human variation data, please review the instructions on submitting to ClinVar. The submission wizard may ease the process. While the LOVD site will be retired on September 30, an FTP archive will continue to store LOVD data for download after this date.

Find, Browse and Follow Biomedical Literature with NCBI’s New PubMed Journals Resource

Following the latest biomedical literature can be a challenge, but NCBI’s new PubMed Journals resource will help you keep up-to-date.

Use PubMed Journals to:

  • Easily find and follow journals of interest.
  • Browse new articles in your favorite journal(s).
  • Keep up-to-date with a Journal News Feed containing new arrivals, news links, trending articles, and important article updates (retractions and more!).

To follow a journal, you’ll need to be logged in to your NCBI account. PubMed Journals is an experiment of PubMed Labs, NCBI’s  product incubator for delivering new features and capabilities to NCBI end users.

September 7 NCBI Webinar: E-Utilities in an Age without GI Numbers

On Wednesday, September 7, the National Center for Biotechnology Information (NCBI) will host a 30-minute webinar briefly describing future plans for the E-utilities API in a time where GI (GenInfo Identifier) numbers are no longer used as the primary identifiers for sequence records. You will learn how to convert GI numbers to accession.version identifiers and how to quickly determine the most recent version of an accession. You’ll also learn about a new E-utility parameter, to be released this fall, that allows these tools to work only with accession.version identifiers.

Date and time: Wednesday, September 7, 9:00 AM PDT

After registering, you will receive a confirmation email with information about attending the webinar. After the live presentation, the webinar will be uploaded to the NCBI YouTube channel. Any related materials will be accessible on the Webinars and Courses page; you can also learn about future webinars on this page.

Institute of Education Sciences (IES) Biographical Sketch Format Now Available for SciENcv Profiles

SciENcv users can now create biosketches in the Institute of Education Sciences (IES) biographical sketch format which can be used to apply for IES funding. In addition, users can also export their citations from the IES Education Resources Information Center (ERIC) database to My Bibliography. This newly added biosketch format is available to download in PDF, MS Word or XML, and users are able to share their SciENcv IES biosketches through a public URL.

The IES biographical sketch consists of five sections:

Creating SciENcv Profiles Using the IES Biographical Sketch Format
There are three ways to create a SciENcv profile in the IES biographical sketch format: entering information manually, copying information from an existing SciENcv biosketch, or using an external data source to populate a biosketch. Further details are available in the NLM Technical Bulletin.

NCBI Web Pages Will Transition to HTTPS Protocol on September 30, 2016

To comply with new government-wide security standards, all NCBI Web pages and API services will switch to the secure HTTPS protocol on September 30. At that time, when you visit NCBI web pages, you will see a green lock and https:// in the address bar instead of http://. This lets you know that you are really on an NCBI page; that the server identity is confirmed and that communication with the server is encrypted and private. General users of NCBI web pages need not update or change anything. You don’t need to clear your cache or update any links to NCBI pages that you’ve put on your own webpages or shared with anyone. All pages will automatically redirect to https://.

To help users transition smoothly with this change, registration is available for the 15-minute NCBI Minute webinar Important Changes to NCBI Web Protocols, on Wednesday, July 27, at 9:00 AM PDT. The session will cover details about how this change will affect access to NCBI pages and services. After the live presentation, the webinar will be archived on the NCBI YouTube channel for future viewing.