Archive for the ‘Events’ Category
Are you wondering what academic health sciences libraries will look like in the future? Have you been puzzling about how to fit new programs or neighbors into your existing library space? Are you contemplating a renovation project? Are you looking for ideas about how to spruce up some tired library areas? If you answered yes to any of these questions, then check out the full schedule, register, submit a lightning talk, and get all the details for the one-day symposium Teaching & Learning in New Library Spaces: The Changing Landscape of Health Sciences Libraries, to be held in Philadelphia on April 18, 2016! The meeting is being sponsored by the National Network of Libraries of Medicine, Middle Atlantic Region (NN/LM MAR), the Association of Academic Health Sciences Libraries (AAHSL), and the National Network of Libraries of Medicine, Southeastern/Atlantic Region (NN/LM SE/A). Registration is free.
This is a great learning opportunity. But register soon, since space is limited!
TITLE: Reproducible Research: Many Dimensions and Shared Responsibilities
DATE: Monday, March 14, 2016 – 11:30a – 1:30p (PDT)
VIDEOCAST: This workshop will be videocast.
INSTRUCTOR: Lisa Meier McShane, Ph.D., Chief, Biostatistics Branch, Biometric Research Program, Division of Cancer Treatment and Diagnosis, National Cancer Institute
REGISTRATION: Not required.
WORKSHOP DESCRIPTION: Biomedical researchers have an ethical responsibility to ensure the reproducibility and integrity of their work, so that precious research resources are not wasted and, most importantly, flawed or misleading results do not make their way to clinical studies where the faulty evidence could adversely affect study participants. Many factors have been suggested as contributors to irreproducible biomedical research, including poor study design, analytic instability of measurement methods, sloppy data handling, inappropriate and misleading statistical analysis methods, improper reporting or interpretation of results, and, on rare occasions, outright scientific misconduct. These problems can occur in any type of biomedical study, whether preclinical or clinical, large or small. Examples of the many potential pitfalls will be discussed along with suggested approaches to avoid them. The first half of the seminar will focus mainly on issues that arise commonly in preclinical and small clinical studies or studies performed retrospectively using stored biospecimens. The second half will elaborate on aspects that are particularly problematic in research involving the use of novel measurement technologies such as “omics assays” which generate large volumes of data and require specialized expertise and computational approaches for proper data analysis and interpretation. The discussions will emphasize the importance of including in a research team all individuals with the needed expertise as early as possible in a project in order to promote a sense of engagement and facilitate good communication across disciplines. Shared credit for scientific accomplishments should be understood as an acceptance of shared accountability for the integrity of the work.
This lecture is part of a full day of scheduled events and activities for the second annual NIH Pi Day, which celebrates the intersection between the quantitative and biomedical sciences. Pi Day is an annual international celebration of the irrational number Pi, 3.14…, on March 14. On Pi Day and every day, NIH recognizes the importance of building a diverse biomedical workforce with the quantitative skills required to tackle future challenges.
Several local and state California agencies, as well as federal agencies, are responding to the natural gas leak at the Southern California Gas Company Aliso Canyon Facility that is affecting the Porter Ranch neighborhood in Los Angeles. The National Library of Medicine Disaster Information Management Research Center (NLM Disaster Health) provides information on public health aspects of chemical incidents for the benefit of health professionals and volunteers who may be responding to an incident and for people living in or concerned about an affected region. The primary releases from the well are natural gas (methane) and odorants (tertiary butyl mercaptan and tetrahydrothiophene). The area is also being affected by “oily mist” containing assorted chemicals: benzene, toluene, ethylene, xylene, and other organics consistent with oil residues from the former oil drilling facility site. Air sampling has also noted radon and hydrogen sulfide.
A resource guide with a compilation of links on the gas leak and specific chemicals detected was prepared by NLM staff members Cindy Love, Siobhan Champ-Blackwell, and Stacey Arnesen. Contributions from NN/LM PSR staff were made by Kelli Ham, Lori Tagawa, and Alan Carr. A PDF version of the guide is also available.
The Affordable Care Act offers many opportunities to American Indians and Alaska Natives (AI/ANs) who lack health insurance coverage. The National Indian Health Board, American Indian Health & Family Services, and the Alaska Native Tribal Health Consortium have many lessons learned to share from their past outreach and enrollment efforts related to enrollment under the Affordable Care Act. This webinar will provide tribes and tribal organizations with effective messaging strategies and outreach practices for AI/ANs that encourage enrollment in the Health Insurance Marketplace, Medicaid, and the Children’s Health Insurance Program.
Moderator: Lillian Zuniga, Member, Cross-RHEC AI/AN Caucus
Dawn Coley, Director of Tribal Health Care Reform Outreach and Education, National Indian Health Board
Ashley Tuomi, DHSc, Executive Director, American Indian Health and Family Services
Charlene Walker, Director, Outreach and Enrollment, Alaska Native Tribal Health Consortium
Date: December 17, 2015
Time: 11:00 a.m. – 12:00 p.m. PST
Full Abstract and Speaker Bios
The Cross-RHEC American Indian and Alaska Native Caucus is a group of Regional Health Equity Council (RHEC) members under the National Partnership for Action to End Health Disparities (NPA). The Caucus provides a forum for RHEC members to increase dialogue across RHECs and to coordinate and enhance tribal, state and local efforts to address health disparities and the social determinants of health for AI/ANs.
From January 4-6, 2016, NCBI will host a genomics hackathon focusing on advanced bioinformatics analysis of next generation sequencing data. This event is for students, post-doctorates, and investigators already engaged in the use of pipelines for genomic analyses from next generation sequencing data. (Specific projects are available to other developers or mathematicians.) Working groups of 5-6 individuals will be formed for twelve teams, in the following sections: Network Analysis of Variants, Structural Variation, RNA-Seq, Streaming Data and Metadata, and Neuroscience/Immunity. The working groups will build pipelines to analyze large datasets within a cloud infrastructure. Please see the application link below for specific team projects.
After a brief organizational session, teams will spend three days analyzing a challenging set of scientific problems related to a group of datasets. Participants will analyze and combine datasets in order to work on these problems. This course will take place at the National Library of Medicine on the NIH main campus in Bethesda, MD. Datasets will come from the public repositories housed at NCBI. During the course, participants will have an opportunity to include other datasets and tools for analysis. Please note, if you use your own data during the course, you will be asked to submit it to a public database within six months of the end of the hackathon. All pipelines and other scripts, software, and programs generated in this course will be added to a public GitHub repository designed for that purpose. A manuscript outlining the design of the hackathon and describing participant processes, products and scientific outcomes will be submitted to an appropriate journal.
To apply, complete the online form, which takes approximately ten minutes. Applications are due by December 1 at 2:00pm PST. Participants will be selected from a pool of applicants; prior students and prior applicants will be given priority in the event of a tie. Please note: applicants are judged based on the motivation and experience outlined in the form itself. Accepted applicants will be notified on December 4 by 11:00am PST, and have until December 7 at 2:00pm PST to confirm their participation. Please include a monitored email address, in case there are follow-up questions.
Participants will need to bring their own laptop to this program. A working knowledge of scripting (e.g., Shell, Python) is necessary to be successful in this event. Employment of higher level scripting or programming languages may also be useful. Applicants must be willing to commit to all three days of the event. No financial support for travel, lodging or meals can be provided for this event. Also note that the course may extend into the evening hours on Monday and/or Tuesday. Please make any necessary arrangements to accommodate this possibility. Please contact email@example.com with any questions.
November is National Native American Heritage Month (NNAHM), a time to recognize the accomplishments of this country’s first inhabitants. As the early inhabitants of this land, the native peoples of North America have their own tribal orientations, language origins, and cultural histories. Today, many healing techniques that are practiced have been adopted from traditions that originate from various Native American tribes. This year’s NNAHM theme, Tribal Diversity: Weaving Together Our Traditions, highlights spirituality as an inseparable element of healing in medicine. Healing the physical parts of a patient is not enough; one must acknowledge the importance of emotional wellness, as influenced by Native American rituals and traditions.
This month is dedicated to building new avenues of opportunity for Native Americans by making critical investments to improve health, to strengthen tribal communities, and to promote educational opportunities at the NIH. Maintaining an inclusive biomedical research workforce with a diversity of talent is critical to the NIH mission of fostering new discoveries and promoting the highest level of scientific integrity to improve the nation’s health. NNAHM allows the opportunity for every individual to learn more about the distinctive backgrounds and heritages of Native Americans. You can show support during National Native American Heritage Month by actively engaging with the Office of Equity, Diversity and Inclusion’s (EDI’s) social media campaign, including the month-long NIH Twitter campaign. More information is located on the Strategist for the Native American Portfolio website.
A recent post in the National Library of Medicine’s Circulating Now blog highlights the fifty years since the Medical Library Assistance Act was signed into law by President Lyndon B. Johnson in October, 1965, establishing the Regional Medical Library Program, now known as the National Network of Libraries of Medicine. The first RML to be selected was the Countway Library of Medicine at Harvard Medical School; the second, the library of the New York Academy of Medicine; and the third, the library of the College of Physicians of Philadelphia. In all, eleven RMLs were initially established. The number of regions was later reduced to seven due to federal budget cuts, and then expanded to its current configuration of eight regions.
The next session of the National Library of Medicine Informatics Lecture Series will be held on November 4, at 11:00am-12:00pm PST, with the feature presentation Use of Clinical Big Data to Inform Precision Medicine. The speaker will be Joshua Denny, MD, Associate Professor in the Departments of Biomedical Informatics and Medicine at Vanderbilt University Medical Center. This talk will be broadcast live and archived.
At Vanderbilt, Dr. Denny and his team have linked phenotypic information from de-identified electronic health records (EHRs) to a DNA repository of nearly 200,000 samples, creating a ‘virtual’ cohort. This approach allows study of genomic basis of disease and drug response using real-world clinical data. Finding the right information in the EHR can be challenging, but the combination of billing data, laboratory data, medication exposures, and natural language processing has enabled efficient study of genomic and pharmacogenomic phenotypes. The Vanderbilt research team has put many of these discovered pharmacogenomic characteristics into practice through clinical decision support. The EHR also enables the inverse experiment – starting with a genotype and discovering all the phenotypes with which it is associated – a phenome-wide association study (PheWAS). Dr. Denny’s research team has used PheWAS to replicate more than 300 genotype-phenotype associations, characterize pleiotropy, and discover new associations. They have also used PheWAS to identify characteristics within disease subtypes.
Dr. Denny is part of the NIH-supported Electronic Medical Records and Genomics (eMERGE) network, Pharmacogenomics Research Network (PGRN), and Implementing Genomics in Practice (IGNITE) networks. He is a past recipient of the American Medical Informatics Association New Investigator Award, Homer Warner Award, and Vanderbilt Chancellor’s Award for Research. Dr. Denny remains active in clinical care and in teaching students. He is also a member of the National Library of Medicine Biomedical Library and Informatics Review Committee.
Video recordings and slide presentations for most sessions of the 2015 Science Boot Camp West for Librarians are now available. The meeting was held July 27-29, 2015, at Stanford University. Video files are large and best viewed by downloading rather than watching online. The full meeting agenda is also available.
The National Library of Medicine is pleased to announce the first annual Donald A.B. Lindberg & Donald West King Lecture on Wednesday, October 7, at 10:00 AM PDT in Bethesda, MD, and will be videocast (and archived for later viewing). The inaugural lecture, which honors recently retired NLM Director Dr. Lindberg and former NLM Deputy Director of Research and Education Dr. King, is titled, Integrating Multi-scale Data for Biomedical Discovery and Clinical Implementation. It will be given by Russell Altman, MD, PhD, of Stanford University. Dr. Altman’s primary interests are in the field of bioinformatics. He is particularly interested in the analysis of protein and RNA structure and function, both in an individual problem-centered manner and on a functional genomic scale. Dr. Altman currently serves as a member of the Advisory Committee to the NIH Director (ACD).