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Archive for the ‘Uncategorized’ Category

The NCBI Gene Database: a librarian’s unknown known for genetic questions

Monday, February 27th, 2017

Stop me if you’ve heard this one before.

A student walks into a library looking for breast cancer information for a class project. All they know is their teacher asked for a report on the genetics of breast cancer. The teacher wants to know the location of the chromosome in the gene assembly where the breast cancer gene mutation occurs, variations in the gene and if  they are associated with other disease, and genetic testing options. The project is due tomorrow. Can you help?

Before you start thinking the joke is on you, consider the NCBI Gene  database.

NCBI Gene is one of those databases you don’t know you need to know until you need to know and you don’t know.

Basically, it’s like a Wikipedia for gene related information.

I draw that similarity because  NCBI Gene centralizes gene related information into individual records. All kinds of gene-specific data are connected, from gene symbols to PubMed citations to 3D gene visualization. Much like a long Wikipedia entry, the gene-specific data are presented in an expandable outline format, so getting to a particular piece of the gene-specific data is fairly painless. It also bears mentioning that much of the data in NCBI Gene is user-submitted, so in that respect, like Wikipedia, NCBI Gene is crowd-sourced.

So the next time a last minute request for genetic information comes your way, don’t panic. Head to NCBI Gene and try searching the keyword. It helps to know the organism (ex: homo sapiens), or you can filter results by Top Organisms. (For the record, the breast cancer gene – BRCA1 is located in Chromosome 17 of the human genome.)

Learn more about how to search NCBI Gene at our bioinformatics webinar next Thursday, March 9 at 10 am PT/ 11 am MT/ Noon CT/ 1pm ET

Can’t make it? Register anyway & we’ll send you a recording. Registration info below.

Five questions you can answer using the NCBI Gene database

Mar 9, 2017
1:00PM – 2:00PM ET






Job Opportunity at NTC

Wednesday, April 22nd, 2015

Assistant Director, National Library of Medicine Training Center

The Spencer S. Eccles Health Sciences Library at the University of Utah seeks an imaginative team leader with progressive ideas to lead the National Library of Medicine Training Center (NTC). The Assistant Director reports directly to the Associate Director of the NN/LM MidContinental Region. The Assistant Director plans and implements the activity of the NTC; supervises NTC professional and support staff; and, in conjunction with National Library of Medicine staff, coordinates the activities of the NTC with other components of the NN/LM program, in order to support the effective use of NLM information products and services.  With the NTC team, the Assistant Director assures compliance with all elements of the Statement of Work that is part of the contract with the National Library of Medicine and develops and implements a strategic program plan for the NTC, including the appropriate assessment and evaluation of instruction. The individual in this position prepares an annual budget and supervises the timely delivery of class reports, quarterly reports, annual reports, and evaluation reports. The Assistant Director conducts online and in-person training classes throughout the United States on PubMed, TOXNET and other topics related to training and NLM resources and coordinates NCBI training. The NTC web site, social media plan, and national and regional class registration system falls under the Assistant Director’s supervision.  Responsibilities also include monitoring new developments related to NLM products and services and monitoring, disseminating and incorporating new information and trends related to distance learning, adult learning and instruction. Position is a full-time, non-tenure track faculty position.

For more information on duties, qualifications, etc. please view our job listing < >

Affirmative Action Statement

The University of Utah is an Affirmative Action/Equal Opportunity employer and does not discriminate based upon race, national origin, color, religion, sex, age, sexual orientation, gender identity/expression, status as a person with a disability, genetic information, or Protected Veteran status. Individuals from historically underrepresented groups, such as minorities, women, qualified persons with disabilities and protected veterans are encouraged to apply. Veterans’ preference is extended to qualified applicants, upon request and consistent with University policy and Utah state law. Upon request, reasonable accommodations in the application process will be provided to individuals with disabilities. To inquire about the University’s nondiscrimination or affirmative action policies or to request disability accommodation, please contact: Director, Office of Equal Opportunity and Affirmative Action, 201 S. Presidents Circle, Rm 135, (801) 581-8365.

The University of Utah values candidates who have experience working in settings with students from diverse backgrounds, and possess a strong commitment to improving access to higher education for historically underrepresented students.

The University of Utah Health Sciences Center is a patient focused center distinguished by collaboration, excellence, leadership, and Respect.  The University of Utah HSC values candidates who are committed to fostering and furthering the culture of compassion, collaboration, innovation, accountability, diversity, integrity, quality, and trust that is integral to the mission of the University of Utah Health Sciences Center.

Turn Text into a Mind Map

Monday, March 30th, 2015

This is a fun tool for getting thoughts down quickly and it has a pretty shallow learning curve. Just go to: It’s free and you don’t even have to register to get started.

NIH Manuscript Submission System (NIHMS)

Monday, January 26th, 2015

Watch this 4 minute video to for step-by-step instructions for submitting manuscripts and associated files to PubMed Central to comply with the National Institutes of Health (NIH) Public Access Policy.

National Guideline Clearinghouse

Monday, December 1st, 2014

Learn about the National Guideline Clearinghouse index of guidelines in this video snippet.