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Archive for the ‘NLM Technical Bulletin’ Category

MeSH Webinar: “2016 MeSH Highlights” on January 20, 2016

Tuesday, January 5th, 2016
Adapted from: NLM Technical Bulletin January 5, 2015  MeSH Webinar: “2016 MeSH Highlights” on January 20, 2016. 2016 Jan-Feb;(408):b1.
On January 20, 2016, join NLM staff for a highlights tour of the 2016 Medical Subject Headings (MeSH). A 30-minute presentation will feature a MeSH tree clean-up project; a new Clinical Study publication type; changes to the trees for diet, food and nutrition; restructuring in pharmacology and toxicology; and new terms in psychology and health care. Following the presentation, Indexing and MeSH experts will be available to answer your questions.

Date and time: Wednesday, January 20, 2016 at 10:00 a.m. MT; 11:00p.m. CST

To register: Go to https://nih.webex.com/nih/onstage/g.php?MTID=e3e7492af438d67d6137642d7bd2efbe9

A recording of the presentation will be posted following the event.

For more information about 2016 MeSH, see What’s New for 2016 MeSH and the Introduction to MeSH – 2016.

The National Library of Medicine 2016 MeSH Update Announced

Monday, December 14th, 2015

Adapted from NLM:

The National Library Medicine, (NLM) has updated its MeSH terms for 2016. MeSH is the controlled vocabulary thesaurus used to index articles by NLM. Changes include, 438 Descriptors added, 17 Descriptors terms updated, 9 Descriptors removed and 1 Subheading deleted.  For more information, please visit the NLM Technical Bulletin webpage.

NCBI Webinar: “Accessing 1000 Genomes Project Data”

Tuesday, December 8th, 2015

Adapted from the NLM Tech Bull. 2015 Nov-Dec;(407):b9.

To automatically receive the latest news and announcements regarding major changes and updates to NCBI resources and tools please see the subscribe page.

NCBI Webinar: “Accessing 1000 Genomes Project Data” on December 17, 2015

December 17, 2015, NCBI staff will demonstrate how to access 1000 Genomes data through SRA, dbVar, SNP and BioProject, as well as through tracks on annotated human sequences in the graphical sequence viewer and Variation Viewer. Attendees will also learn how to display, search, and download individual and genotype level data through the dedicated 1000 Genomes Browser that allows searching by chromosomal position, gene names and other genome markers.

Date and Time: December 17, 2015 11:00a.m. – 12:00p.m. MT; 12:00p.m.-1:00p.m. CST
Registration URL: https://attendee.gotowebinar.com/register/5168155820927556866

After the live presentation, the Webinar will be uploaded to the NCBI YouTube channel. Any related materials will be accessible on the Webinars and Courses page; you can also find information about future Webinars on this page.

New NLM Resource for Nursing Standards and Interoperability

Tuesday, September 8th, 2015

From NLM:

The National Library of Medicine (NLM) has released a new web page – Nursing Resources for Standards and Interoperability. The page is a resource for nurses, students, informaticians and anyone interested in nursing terminologies for systems development. It describes the role of SNOMED CT and Laboratory Observation Identifiers Names and Codes (LOINC) in implementing Meaningful Use in the United States, specifically for the nursing and care domain.

NLM has provided this resource in response to the position statement released by the American Nurses Association (ANA) that reaffirms support for use of recognized terminologies in coding nursing problems, interventions and observations (SNOMED CT) and in nursing assessments and outcomes (LOINC). In addition to SNOMED CT and LOINC, the Nursing Resources for Standards and Interoperability page provides information about other highly utilized Nursing Terminologies. The resource page provides a new video tutorial that describes how to use the Unified Medical Language System (UMLS) Metathesaurus Browser to find Concept Unique Identifiers (CUIs) and extract concept-level synonyms between SNOMED CT and other nursing terminologies. Additionally, links to other NLM Terminology resources and helpful resources are provided.

Send in Your Application to Participate in “A Librarian’s Guide to NCBI” Bioinformatics Course

Friday, August 21st, 2015

Librarians specializing in health and related sciences are invited to participate in the next offering of the bioinformatics training course, “A Librarian’s Guide to NCBI,” sponsored by the National Library of Medicine (NLM), the National Center for Biotechnology Information (NCBI), and the National Network of Libraries of Medicine, NLM Training Center (NTC). Enrollment is limited to 25 participants.

The course provides knowledge and skills for librarians interested in ‘helping patrons use online molecular databases and tools from the NCBI. Prior knowledge of molecular biology and genetics is not required. Participating in the Librarian’s Guide course will improve your ability to initiate or extend bioinformatics services at your institution.

Online Pre-Course and In-Person Course Components
The two parts to “A Librarian’s Guide to NCBI” are listed below. Applicants must complete both parts. Participants must complete the pre-course with full CE credit (Part 1) in order to advance to attend the 5-day in-person course (Part 2).

Part 1: “Fundamentals in Bioinformatics and Searching,” an online (asynchronous) course, October 26-December 11, 2015.
An additional offering of this class will be in January-February 2016.

Part 2: A 5-day in-person course offered on-site at the National Library of Medicine in Bethesda, Maryland, March 7-11, 2016.

Application deadline: September 14, 2015

For more information and a link to the application, visit the NLM Technical Bulletin article: K. Majewski. NLM Tech Bull. 2015 Jul-Aug;(405):e4.

PubMed Mobile Update

Sunday, April 19th, 2015

Canese K. PubMed Mobile Update. NLM Tech Bull. 2015 Mar-Apr;(403):e5. 2015 April 16 [posted]

PubMed Mobile has been updated with a number of styling modifications and additional enhancements including a “Trending articles” feature on the homepage

Read more

NLM Pill Image Recognition Challenge

Sunday, April 19th, 2015

NLM Announces Pill Image Recognition Request for Information (RFI)

Responses, to Help with Project Planning Purposes, Due May 15, 2015

As part of its ongoing work to develop an infrastructure and tools for identifying prescription pills, the National Library of Medicine announces a new Request for Information (RFI), the details of which appear below. This is NOT a solicitation for proposals, proposal abstracts, or quotations. The purpose of this RFI is to obtain knowledge and information for project planning purposes. The government will not award a contract on the basis of this notice, or otherwise pay for information solicited by it. Proprietary information should be clearly marked. The requested information is for planning and market research purposes only and will not be publicly released.

This Request for Information (RFI) is a pilot for a forthcoming Pill Image Recognition Challenge for visually identifying pills. The Challenge has as its main objective the development and discovery of high-quality software that matches images of unknown prescription pills to images in the RxIMAGE database. The pilot will help ensure that the Challenge is successful.

Read more

Draw a Chemical Structure with NLM ChemIDplus!

Tuesday, November 25th, 2014

Chemical structure of caffeine in 3D

You can draw a chemical structure and search for similar substances in the National Library of Medicine (NLM) ChemIDplus Advanced search interface http://chem.sis.nlm.nih.gov/chemidplus/

Start with a quick tutorial on how to use the drawing feature of ChemIDplus:  http://nnlm.gov/ntc/2014/11/19/drawing-a-chemical-structure/

ChemIDplus is a dictionary of over 400,000 chemicals (names, synonyms, and structures). It includes links to NLM and to other databases and resources, including ones to federal, state and international agencies.

 

 

Input Embargo Periods In DOCLINE

Tuesday, September 30th, 2014

Frustrated by the number of requests your library gets for articles that are embargoed? Now you can enter journal embargo periods in DOCLINE. Here is more information about the DOCLINE 5.0 Release http://www.nlm.nih.gov/pubs/techbull/so14/so14_docline_release.html

Screen Capture of DOCLINE embargo period

NCBI Bioinformatics Course Applications Accepted

Tuesday, September 30th, 2014

NCBI logo

From the NLM Technical Bulletin:

Health science librarians in the United States are invited to participate in the next offering of the bioinformatics training course, “A Librarian’s Guide to NCBI,” sponsored by the National Library of Medicine (NLM), the National Center for Biotechnology Information (NCBI), and the National Network of Libraries of Medicine, NLM Training Center (NTC).

The course provides knowledge and skills for librarians interested in helping patrons use online molecular databases and tools from the NCBI. Prior knowledge of molecular biology and genetics is not required. Participating in the Librarian’s Guide course will improve your ability to initiate or extend bioinformatics services at your institution.

Online Pre-Course and In-Person Course Components
There are two parts to “A Librarian’s Guide to NCBI,” listed below. Applicants must complete both parts. Participants must complete the pre-course with full CE credit (Part 1) in order to advance to attend the 5-day in-person course (Part 2).

  1. “Fundamentals of Bioinformatics and Searching” an online (asynchronous) course, January 12-February 13, 2015
  2. A five-day in-person course offered onsite at the National Library of Medicine in Bethesda MD, March 9-13, 2015

Who can apply?

  • Applications are open to health science librarians in the United States.
  • Applicants will be accepted both from libraries currently providing bioinformatics services as well as from those desiring to implement services.

Enrollment is limited 25 participants.

What does it cost?
There is no charge for the classes. Travel and lodging costs for the in-person class are at the expense of the participant.

Important Application Dates

  • Application deadline: November 17, 2014
  • Acceptance notification: On or about December 15, 2014

More information on the course and the application form are located on the NLM Technical Bulletin.