Frustrated by the number of requests your library gets for articles that are embargoed? Now you can enter journal embargo periods in DOCLINE. Here is more information about the DOCLINE 5.0 Release http://www.nlm.nih.gov/pubs/techbull/so14/so14_docline_release.html
Archive for the ‘NLM Announcements’ Category
From the NLM Technical Bulletin:
Health science librarians in the United States are invited to participate in the next offering of the bioinformatics training course, “A Librarian’s Guide to NCBI,” sponsored by the National Library of Medicine (NLM), the National Center for Biotechnology Information (NCBI), and the National Network of Libraries of Medicine, NLM Training Center (NTC).
The course provides knowledge and skills for librarians interested in helping patrons use online molecular databases and tools from the NCBI. Prior knowledge of molecular biology and genetics is not required. Participating in the Librarian’s Guide course will improve your ability to initiate or extend bioinformatics services at your institution.
Online Pre-Course and In-Person Course Components
There are two parts to “A Librarian’s Guide to NCBI,” listed below. Applicants must complete both parts. Participants must complete the pre-course with full CE credit (Part 1) in order to advance to attend the 5-day in-person course (Part 2).
- “Fundamentals of Bioinformatics and Searching” an online (asynchronous) course, January 12-February 13, 2015
- A five-day in-person course offered onsite at the National Library of Medicine in Bethesda MD, March 9-13, 2015
Who can apply?
- Applications are open to health science librarians in the United States.
- Applicants will be accepted both from libraries currently providing bioinformatics services as well as from those desiring to implement services.
Enrollment is limited 25 participants.
What does it cost?
There is no charge for the classes. Travel and lodging costs for the in-person class are at the expense of the participant.
Important Application Dates
- Application deadline: November 17, 2014
- Acceptance notification: On or about December 15, 2014
Due to recent software updates on National Network of Libraries of Medicine (NN/LM) websites at nnlm.gov, Internet Explorer 8 (IE8) is no longer supported. Some read-only sections of nnlm.gov will continue to be available via IE8. However, anyone using IE8 will probably not be able to submit assignments in online courses utilizing the NN/LM Moodle framework, and may not even be able to access and log into Moodle courses. Other nnlm.gov services that require data to be posted to the server are also likely to fail. In addition, DOCLINE will not support IE8 after the end of 2014.
Please visit the NN/LM System Requirements page to see a complete list of supported browsers. For best usability, the National Library of Medicine (NLM) recommends that libraries begin talking to their local IT departments about upgrading their browsers to at least Internet Explorer 10.
Starting January 12, 2016, Microsoft will drop support, including security updates, for older Internet Explorer browser versions. Only the most recent version of IE for a supported operating system will receive technical support and security updates. Microsoft’s Stay up-to-date with Internet Explorer blog page provides a good explanation of why IE users should upgrade to the most current version.
The National Library of Medicine (NLM) Emergency Access Initiative (EAI) has been activated to support healthcare professionals working on the Ebola public health emergency in West Africa.
The EAI is a collaborative partnership between NLM and participating publishers to provide free access to full-text from over 650 biomedical journals and over 4,000 reference books and online databases to healthcare professionals and libraries affected by disasters. It serves as a temporary collection replacement and/or supplement for libraries affected by disasters that need to continue to serve medical staff and affiliated users. It is also intended for medical personnel responding to the specified disaster. EAI is not an open access collection. It is only intended for those affected by the disaster or assisting the affected population. If you know of a library or organization involved in healthcare efforts in response to the Ebola outbreak, please let them know of this service. EAI was activated four times in the past, including following the earthquake and subsequent cholera epidemic in Haiti, flooding in Pakistan and the earthquake and tsunami in Japan.
The free access period is from August 12, 2014 – September 11, 2014
For more information on the Ebola virus visit MedlinePlus.
For updates on the Ebola outbreak in West Africa, visit the Centers for Disease Control and Prevention.
Update: August 14: 9:30AM all NLM systems were restored.
Beginning at 6:00PM, ET, Wednesday, August 13, 2014, the National Library of Medicine will begin a systems shutdown to allow for the emergency repair of the chilled water supply to the NLM Data Center. These systems may be restored as early as 8:00 AM ET Thursday, August 14, 2014, but possibly as late as 11:00 AM.
Most of the databases and systems on the NLM network are expected to be impacted.
Please check the NLM website for updates.
The National Center for Biotechnology (NCBI) has recently announced changes to PubMed Commons. PubMed Commons is a pilot commenting system for authors in PubMed. PubMed is the U.S. National Library of Medicine’s database of the biomedical literature. PubMed Commons enables authors to share opinions and information about scientific publications in PubMed. All authors of publications in PubMed are eligible to become members.
Members play a pivotal role in ensuring that PubMed Commons remains a forum for open constructive criticism and discussion of scientific issues. They can comment on any publication in PubMed, rate the helpfulness of comments, and invite other eligible authors to join.
Among the changes are modifications to streamline the homepage. Information about joining and using PubMed Commons has been consolidated in a single page to help you get started. There will be synopsis of the most recent blog post at the top of the homepage to help you stay up-to-date on PubMed Commons.
For several months, comment rating has given members the chance to weigh in on what comments they find useful. Visitors to PubMed can see these ratings alongside comments. Ratings are a key element in calculating the comment and commenter scores that determine the appearance of comments in the “Selected comments” stream on our homepage.
Some new site modifications will highlight contributions to PubMed Commons. On homepage, “Top comments now” will feature the top three recent comments. On PubMed records, “Selected comments” (from the homepage stream) prompt the appearance of an icon above abstracts, directing readers to comments below.
In response to community feedback, corresponding authors of comments on their publications are being contacted to invite them to join PubMed Commons. This new procedure has resulted in an increase in author responses.
More information is available on the PubMed Commons Blog.
The National Library of Medicine Training Center (NTC) is offering an online, asynchronous class called “Discovering TOXNET” from October 20 – November 14, 2014.
Discover TOXNET and other NLM environmental health databases through videos, guided tutorials, and discovery exercises. The class is taught online in thirteen independent modules.
TOXNET is a web-based system of databases covering hazardous chemicals, environmental health, toxic releases, chemical nomenclature, poisoning, risk assessment and regulations, and occupational safety and health. The independent modules cover TOXLINE, ChemIDplus, TRI, TOXMAP, Hazardous Substances Data Bank, IRIS, Haz-Map, LactMed, WISER, CHEMM, REMM, LiverTox, and more. You’ll learn about the resources through videos, guided tutorials, and discovery exercises.
Who should take the class?
Health sciences librarians and health or environmental sciences professionals interested in unlocking the information in TOXNET and the other environmental health and toxicology resources.
How much time?
You will work on your own time over a period of 4 weeks to complete the modules that are of interest to you. There is one required module; the remaining modules are optional. This class is offered for variable MLA Continuing Education credit. Each module will be offered for 0.5 to 2.0 credit hours, for a total of up to 12 hours. Credit will not be awarded for partial completion of a module. Total credit awarded will be based on completed modules with a minimum of 1.0 credit hours.
What happens during the class?
This course is offered asynchronously through Moodle; you will work at your own pace. Each module consists of guided interactive online tutorials AND/OR tutorial videos as well as discovery exercises. Instructors will be available to answer questions and provide assistance throughout the course.
The modules are:
- Introduction to TOXNET: 0.5 hour (Required)
- TOXLINE: 1.0 hour
- ChemIDplus: 2.0 hours
- Integrated Risk Information System & Risk Assessment: 1.0 hour
- Hazardous Substances Databank: 1.5 hours
- Toxic Release Inventory: 1.0 hour
- TOXMAP: 1.5 hours
- Household Products Database: 0.5 hour
- LactMed: 0.5 hour
- Haz-Map: 0.5 hour
- WISER & CHEMM: 1.0 hour
- REMM: 0.5 hour
- LiverTox: 0.5 hour
How do I register?
Space in the class are limited, so register today!
For questions, contact the NTC
Call for Nominations: As the U.S. Member of the International Health Terminology Standards Development Organisation (IHTSDO), the National Library of Medicine (NLM) is soliciting nominations of potential candidates for the four IHTSDO Standing Committees – Content, Quality Assurance, Implementation & Education (formerly Implementation and Innovation), and Technical. These Committees have important roles in the ongoing development of the SNOMED CT clinical terminology and in the IHTSDO. Nominations are due to NLM by COB August 4, 2014.
The current roster, terms of reference, and recent reports of each Committee are available on the IHTSDO website. The Committees are described in Sections 9.4-9.5 of the Articles of the IHTSDO.
Roughly half of each Standing Committee’s 12 members are serving terms that expire in December 2014. People elected to these slots will serve for 2 years (Jan. 2015-Dec. 2016). There may be additional Committee vacancies caused by resignations; people elected to fill these mid-term slots will serve for 1 year (Jan-Dec. 2015).
Current Committee members whose terms are expiring are eligible for re-nomination to the same committee provided they have not served more than six consecutive years on that committee. Re-nomination to the same committee is possible after sitting out a minimum of one year from the date they left the Committee. There is no impediment to a Committee member leaving one Committee and being nominated to another. Current Committee members eligible for re-nomination must submit a nomination package (see details below).
U.S. Nomination Process: All U.S. SNOMED CT Affiliate Licensees (aka, all U.S. UMLS Licensees) may vote to select the U.S. candidates for IHTSDO Committees. The timeline for nominations and elections is:
- July 15 – August 4: NLM accepts nominations of potential candidates for the four IHTSDO Standing Committees. Only candidates with complete nomination packets will be accepted (see below for details and required forms).
- August 6 – August 25: U.S. SNOMED CT Affiliates cast votes for their top three candidates for each Standing Committee. Instructions for casting ballots will be sent to U.S. SNOMED CT Affiliates on August 5th. For each Committee, the three candidates receiving the highest number of votes will become the U.S. nominees for the Committee.
- September 1, 2014: NLM will submit the names of the three (3) candidates receiving the highest number of votes as nominees for each of the four Committees to the IHTSDO for consideration by the IHTSDO General Assembly.
- October 26-29, 2014: IHTSDO will announce the final results of the election process during the General Assembly Meeting to be held in conjunction with the IHTSDO Community of Practice Meeting.
Committee Obligations and Participation Logistics: English is the official language of the IHTSDO, but Committee Members must be willing to take extra steps to ensure understanding by those for whom English is a second language. Teleconference arrangements are available for all Committee meetings, but, given the geographic distribution of IHTSDO members (currently 27 Members from all corners of the globe), meeting schedules cannot be convenient for all relevant time zones. The IHTSDO encourages Committee Members to attend at least one of the two major IHTSDO meetings each year in person. Committee Members must participate (either in person or via teleconference) in at least 50% of their Committee’s meetings to retain their seat on the Committee. U.S. Committee members may also be called upon to provide advice and input to NLM on matters related to the IHTSDO and SNOMED CT.
Submitting your nomination: Nominations are due to NLM by COB August 4, 2014. Please submit your nomination packets to NLM by e-mail with the subject line “US Nominations – IHTSDO Standing Committees”. NOTE: Nominations MUST be for a specific Committee.
Attention health science librarians in the United States who wish to initiate and/or extend bioinformatics services at your institution! The National Center for Biotechnology Information (NCBI) and the NLM Training Center (NTC) will be offering “A Librarian’s Guide to NCBI” course in 2015. Participants who complete the class will be eligible for Medical Library Association (MLA) Continuing Education credits. The course is free, but travel costs are at the expense of the participant.
There are two parts to the course, and applicants must take both parts:
Part 1: “Fundamentals in Bioinformatics and Searching” is a six-week, online (asynchronous) pre-course.
Part 2: A five-day in-person course offered on-site at the National Library of Medicine in Bethesda, Maryland.
Monday, September 29, 2014 – Watch for a detailed announcement about the course and application process here in the NLM Technical Bulletin.
Monday, November 17, 2014 – Application deadline
Monday, December 15, 2014 – Acceptance notifications e-mailed
Monday, January 12, 2015 – “Fundamentals in Bioinformatics and Searching” pre-course begins
Monday, March 9, 2015 – “A Librarian’s Guide to NCBI” five-day in-person class begins at NLM
More information, including registration specifics, will be coming soon.
Are you weeding your collection? Don’t immediately throw the journals away. Check with NLM to see if they need missing journals.
NLM’s Journal Donation System makes it possible for libraries to determine whether NLM needs any volumes of the print journals they plan to discard. The system can be used by DOCLINE and non-DOCLINE libraries to offer any title, including titles not owned by NLM. The system can be accessed at http://www.nlm.nih.gov/journaldonation/ or by searching “Journal Donation System” on NLM’s home page. In the system, click on “Help” for detailed instructions. For additional assistance, contact NLM at (301) 496-0081 or NLMJournalDonation@mail.nlm.nih.gov . NLM will pay shipping for volumes we need. To donate pre-1871 journal volumes to the History of Medicine Division, see http://www.nlm.nih.gov/hmd/about/donate.html.
Since the beginning of the online donation system in April 2009, over 10,000 gifts have been added to the collection. With the help of libraries planning to discard journal volumes, NLM can build on the success achieved to date.