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Archive for the ‘Search Tools’ Category

The National Library of Medicine Wants Your Stories!

Do you know any stories about people using NLM resources to find out something interesting, forge a new path, or improve their lives in a unique or dramatic way? Or, more simply, have you ever found just the right information at just the right time, for yourself or for a patron? For this year’s theater presentations at the Medical Library Association annual meeting in Austin, TX, NLM staff members who develop the resources are interested in teaming with the librarians who use them. They are interested in stories (great and small) about any NLM resource, but especially:

  • HSRProj
  • Health Services Research Resources on Comparative Effectiveness, Patient Centered Outcomes, Health Technology Assessment
  • DIMRC and other disaster resources
  • BIBFRAME and Linked Data
  • History of Medicine social media (e.g., Circulating Now)
  • MedlinePlus
  • PubMed Central
  • PubMed
  • PubMed Health

Anyone interested in sharing their story should contact Kate Majewski at NLM.

List of Serials Indexed for Online Users, 2015 Edition, Now Available in XML

The List of Serials Indexed for Online Users (LSIOU), 2015 edition, is now available in XML format. The 2015 edition contains 14,856 serial titles, including titles currently indexed for MEDLINE as well as titles indexed over time which have ceased or changed titles. The titles are listed alphabetically by the journal title abbreviation. Tailored lists of indexed journals may be generated from the NLM Catalog. While the XML version of the LSIOU is a snapshot in time, the results of a search in the NLM Catalog will provide a “real time” list for the LSIOU.

For a “real time” list for the LSIOU, enter reportedmedline in the search box and click “Search.” For a list of only the currently indexed MEDLINE journals, enter currentlyindexed in the search box and click “Search.” Display and sort formats are selected from the results page; click on the Display Settings pull-down menu to choose a display format (for example, the Journal display) and an appropriate sort (for example, Title or Title Abbreviation). To save the entire list as one document, click on the “Send to” pull-down menu, with “File” as the destination, choose a format and sort order, and then click “Create File.” Click “Save” in the File Download pop-up box. Provide your directory location and desired file name.

Additional information about journals indexed for MEDLINE can be found via the links from the MEDLINE/PubMed Resources web page. This page includes Journals Recently Accepted by NLM for Inclusion in MEDLINE, a list of titles selected by the Literature Selection Technical Review Committee (LSTRC) that meets three times per year in February, June, and October. Results from those meetings appear online about six weeks after each meeting, both on the web page and in the NLM Catalog. For additional details about searching the NLM Catalog, visit NLM Catalog Quick Tours and Searching for Journals in the NLM Catalog.

National Library of Medicine Announces Pill Image Recognition Request for Information

NLM Pill Image Recognition Pilot logoThe National Library of Medicine (NLM) has issued a call for participation in a Pill Image Recognition (PIR) Request for Information (RFI). Unidentified and misidentified prescription pills present challenges for individuals and professionals. Unidentified pills can be found by family members, health professionals, educators, and law enforcement. The nine out of 10 US citizens over age 65 who take more than one prescription pill can be prone to misidentifying those pills.

This PIR RFI is a pilot for a forthcoming PIR Challenge whose goal is to develop smart phone apps that individuals can use to take pictures of prescription pills and then search for and retrieve pill images and associated data of likely matches in an NLM database. NLM anticipates that respondents will include professionals and students, individually or in teams, in computer vision and computer graphics working on content-based image retrieval. Instructions for responding to the RFI are available on the PIR website.

The deadline for submissions to this RFI is Monday, April 27, 2015.

Nucleic Acids Research Database 2015 Issue Features NCBI Databases

The 22nd annual edition of the Nucleic Acids Research Database Issue features nine free full-text papers from NCBI staff that present recent updates to the databases, including GenBank, Gene, and RefSeq. These papers describe the state of NCBI databases as well as future plans to improve their use, from new reference resources created to improve the usability of viral sequence data to in-house curation efforts in the Conserved Domain Database, and much more. The articles are all available from PubMed.

National Library of Medicine Resource Update: LiverTox

The National Library of Medicine (NLM) LiverTox resource is a free website providing up-to-date, comprehensive and unbiased information about drug-induced liver injury caused by prescription and nonprescription drugs, herbals, and dietary supplements. LiverTox represents a collaborative effort by medical and scientific specialists to provide a central repository of clinical information in support of clinical and basic research on the prevention and control of drug-induced liver injury. The site also provides guidance to clinicians and healthcare providers on the diagnosis and management of this important cause of liver disease. LiverTox contains approximately 850 drug and herbal records. It is a joint effort of the Liver Disease Research Branch of the National Institute of Diabetes and Digestive and Kidney Diseases (NIDDK) and the Division of Specialized Information Services (SIS) of NLM.

Look for these LiverTox updates in the coming months:

  • Addition of about 100 new records.
  • New histopathologic imaging (microscopic structure of diseased tissue) from the National Cancer Institute (NCI) included in drug records.
  • Section  providing public access to reference cases, initially populated with clinical cases from the Drug-Induced Liver Injury Network, a consortium of eight academic medical centers throughout the United States. This repository will allow for statistical analyses of trends in drug-induced liver disease, as well as better characterization of clinical patterns of injury.

National Library of Medicine Resource Update: Alternatives to Animal Testing Portal

The National Library of Medicine’s (NLM) Alternatives to Animal Testing (ALTBIB) portal provides access to PubMed/MEDLINE citations relevant to alternatives to the use of live vertebrates in biomedical research and testing. The ALTBIB topics and subtopics are aligned with current U.S. and international approaches. For example, information is provided on in silico, in vitro, and refined or improved animal testing methods. Strategies that incorporate validated methods and other approaches are also covered. In addition to the topic areas for PubMed searches, the ALTBIB portal includes a searchable bibliographic collection of alternatives to animal testing, including citations from published articles, books, book chapters, and technical reports published from 1980 to 2000.

The Hazardous Substances Data Bank (HSDB), part of NLM’s Toxicology Data Network (TOXNET), now includes subheadings (“/alternative/ and /in vitro tests/”) in the Human and Non-Human Toxicity Excerpts fields. These subheadings allow users to locate data from in vitro and other alternative methods. For example, users can search “ALTERNATIVE IN VITRO TESTS” to locate records with this data. Coverage includes results from methods validated by the Interagency Coordinating Committee on the Validation of Alternative Methods (ICCVAM) and the European Union Reference Laboratory for Alternatives to Animal Testing (EURL-ECVAM).

NAL Unveils New Search Engine for Published USDA Research!

The National Agricultural Library (NAL) has unveiled PubAg, a user-friendly search engine that provides public enhanced access to research published by the U.S. Department of Agriculture (USDA) scientists. NAL is part of USDA’s Agricultural Research Service (ARS), and has one of the world’s largest and most comprehensive compilations of agricultural information available.

PubAg is a new portal for literature searches and full-text access of more than 40,000 scientific journal articles by USDA researchers, mostly from 1997 to 2014. New articles by USDA researchers will be added almost daily, and older articles may be added if possible. There is no access fee, and no requirement for a username, password or any other form of registration to use PubAg. Phase I of PubAg provides access for searches of 340,000 peer-reviewed agriculturally related scientific literature, mostly from 2002 to 2012, each entry offering a citation, abstract and a link to the article if available from the publisher. This initial group of highly relevant, high-quality literature was taken from the 4 million bibliographic citations in NAL’s database. Phase II of PubAg, planned for later in 2015, will include the remainder of NAL’s significant bibliographic records. PubAg has been specifically designed to be easy to use and to serve a number of diverse users including the public, farmers, scientists, academicians and students.

NLM HIV/AIDS Portal Now Offers Multilingual Content Search!

NLM’s HIV/AIDS Portal now offers the ability to search for multilingual content. The new Multilingual Search interface searches specifically for HIV/AIDS related topics from the multilingual and multicultural content of HealthReach (formerly RHIN). HealthReach offers easy access to quality health information to individuals for whom English is not the primary language. It is also an important resource for health professionals as well as public health administrators. Users can search by subject/topic, language, and format. The default for the search is always HIV/AIDS so there is no need for these terms to be included in the search. There is also an Advanced Search capability to further refine retrieval. The content is available in audio and video formats as well as text. For text documents there is a feature that allows viewing the document in a split screen with one side being English and the other being the language requested in the search.

NCCAM Gets New Name!

As part of the omnibus budget measure signed by President Obama in December 2014, Congress changed the name of NCCAM to the National Center for Complementary and Integrative Health, or NCCIH. The change was made to more accurately reflect the Center’s research commitment to studying promising health approaches that are already in use by the American public. Since the Center’s inception, complementary approaches have grown in use to the point that Americans no longer consider them an alternative to medical care. The name change is in keeping with the Center’s existing Congressional mandate and is aligned with the strategic plan currently guiding the Center’s research priorities and public education activities. The mission of the organization will remain unchanged.

Large population-based surveys have found that the use of “alternative medicine,” unproven practices used in place of conventional medicine, is actually rare. By contrast, integrative health care, which can be defined as combining complementary approaches into conventional treatment plans, has grown within care settings across the nation, including hospitals, hospices, and military health facilities. The goal of an integrative approach is to enhance overall health, prevent disease, and to alleviate debilitating symptoms such as pain and stress and anxiety management that often affects patients coping with complex and chronic disease.

The Office of Alternative Medicine (OAM) was established in 1992 within the Office of the Director, NIH, to facilitate the study and evaluation of complementary and alternative medical practices and to disseminate the resulting information to the public. In 1998, NCCAM was established by Congress, elevating OAM to the status of an NIH center. In February 2011, NCCAM released Exploring the Science of Complementary and Alternative Medicine: Third Strategic Plan 2011–2015, which continues to guide NCCIH’s work.

2015 MeSH Now Available in PubMed!

As of December 15, PubMed/MEDLINE citations (including the backlog of citations indexed since November 19 with 2015 MeSH), the MeSH database, and the NLM Catalog were updated to reflect 2015 MeSH. The MeSH translation tables were also updated on December 15. Now that end-of-year activities are complete, MEDLINE/PubMed may be searched using 2015 MeSH vocabulary. Highlights of MEDLINE Data Changes for 2015 were previously published in the NN/LM PSR Latitudes blog. On December 16, NLM resumed daily MEDLINE updates to PubMed.