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Archive for the ‘Search Tools’ Category

Community Health Status Indicators Website Launch

The CDC just released the updated Community Health Status Indicators (CHSI), an interactive online tool that provides public health profiles for all 3,143 counties in the United States. Each profile includes key indicators of health outcomes, which describes the population health status of a county and factors that have the potential to influence health outcomes, such as health care access and quality, health behaviors, social factors, and the physical environment. First issued in 2000, CHSI 2015 represents the collaboration of public health partners in the public, non-profit and research communities. The re-designed online application includes updated peer county groups, health status indicators, a summary comparison page, and U.S. Census tract data and indicators for sub-populations (age groups, sex, and race/ethnicity) to identify potential health disparities. In this new version of CHSI, all indicators are benchmarked against those of peer counties, the median of all U.S. counties, and Healthy People 2020 targets. Organizations conducting community health assessments can use CHSI data to:

  • Assess community health status and identify disparities;
  • Promote a shared understanding of the wide range of factors that can influence health; and
  • Mobilize multi-sector partnerships to work together to improve population health.

To promote awareness of the new tool, the CDC and the National Library of Medicine are co-hosting two sessions of a one-hour briefing that will provide an overview of the new features and redesign of CHSI. Registration is available for either March 24, 12-1:00 PM PDT, or March 26, 8-9:00 AM PDT. Once your registration request is approved, you will receive instructions for joining the meeting.

NCBI Homepage Update: Action Buttons and Category Pages

The NCBI homepage has six new buttons on it: Submit, Download, Learn, Develop, Analyze, and Research. Each of these leads to an action page devoted to a particular set of services. These action pages allow easy access to the pages and resources you need to complete tasks. For instance, you can: Find information about the Entrez API; Find an upcoming NCBI webinar, Find an NCBI tool that designs PCR primers, and much more! On the new action pages, you’ll also see six categories in the header: Literature, Health, Genomes, Genes, Proteins, and Chemicals. These category pages highlight useful databases, tools and resources for each of the topics all in one place.

Also included is a blue Feedback button on the left side of the Download, Learn, Develop, and Analyze pages so that you can send comments to NCBI. More information about the new homepage will be released on NCBI News and to the blog, NCBI Insights.

The National Library of Medicine Wants Your Stories!

Do you know any stories about people using NLM resources to find out something interesting, forge a new path, or improve their lives in a unique or dramatic way? Or, more simply, have you ever found just the right information at just the right time, for yourself or for a patron? For this year’s theater presentations at the Medical Library Association annual meeting in Austin, TX, NLM staff members who develop the resources are interested in teaming with the librarians who use them. They are interested in stories (great and small) about any NLM resource, but especially:

  • HSRProj
  • Health Services Research Resources on Comparative Effectiveness, Patient Centered Outcomes, Health Technology Assessment
  • DIMRC and other disaster resources
  • BIBFRAME and Linked Data
  • History of Medicine social media (e.g., Circulating Now)
  • MedlinePlus
  • PubMed Central
  • PubMed
  • PubMed Health

Anyone interested in sharing their story should contact Kate Majewski at NLM.

List of Serials Indexed for Online Users, 2015 Edition, Now Available in XML

The List of Serials Indexed for Online Users (LSIOU), 2015 edition, is now available in XML format. The 2015 edition contains 14,856 serial titles, including titles currently indexed for MEDLINE as well as titles indexed over time which have ceased or changed titles. The titles are listed alphabetically by the journal title abbreviation. Tailored lists of indexed journals may be generated from the NLM Catalog. While the XML version of the LSIOU is a snapshot in time, the results of a search in the NLM Catalog will provide a “real time” list for the LSIOU.

For a “real time” list for the LSIOU, enter reportedmedline in the search box and click “Search.” For a list of only the currently indexed MEDLINE journals, enter currentlyindexed in the search box and click “Search.” Display and sort formats are selected from the results page; click on the Display Settings pull-down menu to choose a display format (for example, the Journal display) and an appropriate sort (for example, Title or Title Abbreviation). To save the entire list as one document, click on the “Send to” pull-down menu, with “File” as the destination, choose a format and sort order, and then click “Create File.” Click “Save” in the File Download pop-up box. Provide your directory location and desired file name.

Additional information about journals indexed for MEDLINE can be found via the links from the MEDLINE/PubMed Resources web page. This page includes Journals Recently Accepted by NLM for Inclusion in MEDLINE, a list of titles selected by the Literature Selection Technical Review Committee (LSTRC) that meets three times per year in February, June, and October. Results from those meetings appear online about six weeks after each meeting, both on the web page and in the NLM Catalog. For additional details about searching the NLM Catalog, visit NLM Catalog Quick Tours and Searching for Journals in the NLM Catalog.

National Library of Medicine Announces Pill Image Recognition Request for Information

NLM Pill Image Recognition Pilot logoThe National Library of Medicine (NLM) has issued a call for participation in a Pill Image Recognition (PIR) Request for Information (RFI). Unidentified and misidentified prescription pills present challenges for individuals and professionals. Unidentified pills can be found by family members, health professionals, educators, and law enforcement. The nine out of 10 US citizens over age 65 who take more than one prescription pill can be prone to misidentifying those pills.

This PIR RFI is a pilot for a forthcoming PIR Challenge whose goal is to develop smart phone apps that individuals can use to take pictures of prescription pills and then search for and retrieve pill images and associated data of likely matches in an NLM database. NLM anticipates that respondents will include professionals and students, individually or in teams, in computer vision and computer graphics working on content-based image retrieval. Instructions for responding to the RFI are available on the PIR website.

The deadline for submissions to this RFI is Monday, April 27, 2015.

Nucleic Acids Research Database 2015 Issue Features NCBI Databases

The 22nd annual edition of the Nucleic Acids Research Database Issue features nine free full-text papers from NCBI staff that present recent updates to the databases, including GenBank, Gene, and RefSeq. These papers describe the state of NCBI databases as well as future plans to improve their use, from new reference resources created to improve the usability of viral sequence data to in-house curation efforts in the Conserved Domain Database, and much more. The articles are all available from PubMed.

National Library of Medicine Resource Update: LiverTox

The National Library of Medicine (NLM) LiverTox resource is a free website providing up-to-date, comprehensive and unbiased information about drug-induced liver injury caused by prescription and nonprescription drugs, herbals, and dietary supplements. LiverTox represents a collaborative effort by medical and scientific specialists to provide a central repository of clinical information in support of clinical and basic research on the prevention and control of drug-induced liver injury. The site also provides guidance to clinicians and healthcare providers on the diagnosis and management of this important cause of liver disease. LiverTox contains approximately 850 drug and herbal records. It is a joint effort of the Liver Disease Research Branch of the National Institute of Diabetes and Digestive and Kidney Diseases (NIDDK) and the Division of Specialized Information Services (SIS) of NLM.

Look for these LiverTox updates in the coming months:

  • Addition of about 100 new records.
  • New histopathologic imaging (microscopic structure of diseased tissue) from the National Cancer Institute (NCI) included in drug records.
  • Section  providing public access to reference cases, initially populated with clinical cases from the Drug-Induced Liver Injury Network, a consortium of eight academic medical centers throughout the United States. This repository will allow for statistical analyses of trends in drug-induced liver disease, as well as better characterization of clinical patterns of injury.

National Library of Medicine Resource Update: Alternatives to Animal Testing Portal

The National Library of Medicine’s (NLM) Alternatives to Animal Testing (ALTBIB) portal provides access to PubMed/MEDLINE citations relevant to alternatives to the use of live vertebrates in biomedical research and testing. The ALTBIB topics and subtopics are aligned with current U.S. and international approaches. For example, information is provided on in silico, in vitro, and refined or improved animal testing methods. Strategies that incorporate validated methods and other approaches are also covered. In addition to the topic areas for PubMed searches, the ALTBIB portal includes a searchable bibliographic collection of alternatives to animal testing, including citations from published articles, books, book chapters, and technical reports published from 1980 to 2000.

The Hazardous Substances Data Bank (HSDB), part of NLM’s Toxicology Data Network (TOXNET), now includes subheadings (“/alternative/ and /in vitro tests/”) in the Human and Non-Human Toxicity Excerpts fields. These subheadings allow users to locate data from in vitro and other alternative methods. For example, users can search “ALTERNATIVE IN VITRO TESTS” to locate records with this data. Coverage includes results from methods validated by the Interagency Coordinating Committee on the Validation of Alternative Methods (ICCVAM) and the European Union Reference Laboratory for Alternatives to Animal Testing (EURL-ECVAM).

NAL Unveils New Search Engine for Published USDA Research!

The National Agricultural Library (NAL) has unveiled PubAg, a user-friendly search engine that provides public enhanced access to research published by the U.S. Department of Agriculture (USDA) scientists. NAL is part of USDA’s Agricultural Research Service (ARS), and has one of the world’s largest and most comprehensive compilations of agricultural information available.

PubAg is a new portal for literature searches and full-text access of more than 40,000 scientific journal articles by USDA researchers, mostly from 1997 to 2014. New articles by USDA researchers will be added almost daily, and older articles may be added if possible. There is no access fee, and no requirement for a username, password or any other form of registration to use PubAg. Phase I of PubAg provides access for searches of 340,000 peer-reviewed agriculturally related scientific literature, mostly from 2002 to 2012, each entry offering a citation, abstract and a link to the article if available from the publisher. This initial group of highly relevant, high-quality literature was taken from the 4 million bibliographic citations in NAL’s database. Phase II of PubAg, planned for later in 2015, will include the remainder of NAL’s significant bibliographic records. PubAg has been specifically designed to be easy to use and to serve a number of diverse users including the public, farmers, scientists, academicians and students.

NLM HIV/AIDS Portal Now Offers Multilingual Content Search!

NLM’s HIV/AIDS Portal now offers the ability to search for multilingual content. The new Multilingual Search interface searches specifically for HIV/AIDS related topics from the multilingual and multicultural content of HealthReach (formerly RHIN). HealthReach offers easy access to quality health information to individuals for whom English is not the primary language. It is also an important resource for health professionals as well as public health administrators. Users can search by subject/topic, language, and format. The default for the search is always HIV/AIDS so there is no need for these terms to be included in the search. There is also an Advanced Search capability to further refine retrieval. The content is available in audio and video formats as well as text. For text documents there is a feature that allows viewing the document in a split screen with one side being English and the other being the language requested in the search.