Archive for the ‘NLM Resources’ Category
NCBI will present the first iteration of NCBI NOW, a free online experience aimed at those new to next generation sequencing (NGS) analysis, from October 13-23. Enrollment in this course is limited to the first 1,000 participants who sign up through the ORAU Portal. Since enrollment is on a first-come, first-served basis, please only sign up for this educational opportunity if you will be able to participate fully. Learners will watch 6-7 videos (average video duration: 45-60 minutes) online during the first seven days of the course. These videos will cover the basics of NGS data, preprocessing, quality control and alignment strategies for both DNA-Seq and RNA-Seq, as well as a brief discussion of downstream analysis. Additionally, there will be demonstrations about leveraging BLAST tools for NGS analysis.
Next, participants will apply a selection of RNA-Seq alignment algorithms over three days (1-2 hours per day), mapping RNA-Seq data to GRCh38 chromosome 20. Finally, participants will compare the results of these mappers for specific genes. Throughout the course, participants will be able to post questions at Biostars; experts from NCBI and elsewhere will be available online to answer questions. Learners will emerge from the course equipped to map their own RNA-Seq or DNA-Seq data to the human genome, understand the options for downstream analysis, and use their understanding of the basic steps of data processing to interact more effectively with bioinformatician collaborators.
The Regional Office of the National Network of Libraries of Medicine, Middle Atlantic Region, is offering several webinars during the months of October and November. All sessions offer MLA continuing education credit.
- Introduction to the National Sexual Violence Resource Center Library (Boost Box)
Date: Tuesday, October 13, 9:00 – 10:00 AM PDT
Description: This presentation will introduce librarians and others to the extensive, unique collections of the National Sexual Violence Resource Center (NSRVC) Library. Providing resources to researchers, advocates, medical professionals, law enforcement, allied organizations, and the public since 2000, the NSVRC Library may be considered the largest collection of materials on sexual violence and prevention in the world, currently housing a collection of over 35,000 unique titles. Learn how NSVRC can provide valuable resources and training materials for the medical profession, public health practitioners, and academic institutions nationwide. No registration is required.
- HIV/AIDS Resources
Date: Wedneday, October 14, 9:00 – 10:00 AM PDT
Description: AIDSinfo offers access to the latest, federally approved HIV/AIDS medical practice guidelines, HIV treatment and prevention clinical trials, and other research information for health care providers, researchers, people affected by HIV/AIDS, and the general public. AIDSource was developed by NLM to ensure that those seeking information about HIV/AIDS have a source of quality reviewed current content, and provides access to HIV/AIDS-related information both within and outside of the federal government. The presentation will cover the many features of AIDSinfo and AIDSource, including the portfolio of AIDSinfo mobile apps. No registration is required.
- Wearable Technology: If the Tech Fits, Wear It
Date: Wednesday, October 28, 8:00 – 9:00 AM PDT
Description: “Wearable technology” and “wearable devices” are phrases that describe electronics and computers that are integrated into clothing and other accessories that can be worn comfortably on the body. Examples of wearable devices include glasses, watches, headbands, and jewelry. While these technologies show great influence in fashion and entertainment, they have the largest impact in the areas of health, medicine, and fitness. Librarians are also exploring wearable technology’s potential for enhancing services and expanding outreach to their organizations. No registration is required.
- Building Collections and Connections for LGBT Health Awareness: Improving the Health, Safety, and Well-Being of Lesbian, Gay, Bisexual and Transgender Persons
Date: Tuesday, November 10, 12:00 – 1:30 PM PST
Description: NN/LM MAR Outreach Coordinator Kate Flewelling will teach this new course. As a result of the session, participants will develop a better understanding of the health information needs of the LGBT community; have an increased awareness of the importance of LGBT education for health care providers and the role of implicit bias in healthcare; discover resources that can be utilized in reference interactions; be able to identify electronic, print, and other resources for building a LGBT collection; and gain ideas for outreach strategies to the LGBT community. Registration is required.
The National Library of Medicine’s web portal for HIV/AIDS information has been redesigned and given a new name. The new website, AIDSource, offers access to a comprehensive collection of HIV/AIDS-related information resources that are reviewed and selected by expert information specialists and librarians. Visitors to AIDSource will now be able to view the website content on their mobile device. The website is now automatically optimized for display across all device types, including desktop computers, tablets, and smartphones. The new design of the website was constructed by user feedback received through a survey in 2014. In addition to responsive design, the new AIDSource design also includes the following new features:
- Addition of a slider feature that highlights resources of interest
- Addition of images for topics
- Improvements in website navigation, including a menu on all pages of the website that provides access to all topic areas
The mission of AIDSource is to serve as a reliable source for access to HIV/AIDS-related information from federal and non-federal sources. Resources included on the AIDSource website are organized by both topic of interest and audience, and information is available in English and Spanish. NLM welcomes your feedback on the AIDSource website.
Now available from the National Library of Medicine is an extensive selection from the John E. Fogarty Papers at Providence College, on the National Library of Medicine’s Profiles in Science web site. Profiles in Science is a digital project of the Library that provides online access to archival collections of twentieth-century leaders in science, medicine, and public health. John Edward Fogarty (1913–1967) was an American legislator who became known as “Mr. Public Health” for his outstanding advocacy of federal funding for medical research, health education, and health care services. As Democratic representative for Rhode Island, he served in the U.S. House of Representatives from 1941 to 1967, and chaired the House Appropriations Subcommittee for the Departments of Labor and Health, Education, and Welfare beginning in 1949. Under his leadership the budget for NIH grew from $37 million in 1949 to $1.24 billion in 1967. In 1947, Fogarty became convinced that more medical research and better health services were the surest way to help Americans prosper. As chairman of the subcommittee, he worked with a bipartisan coalition to rapidly expand funding for research at the National Institutes of Health, and to fund improved health and educational services for blind, deaf, and mentally disabled children. Fogarty also sponsored many bills for the construction of research facilities, expansion of medical, dental, and public health programs, and construction of community mental health centers. In fact, he contributed to virtually every piece of health-related legislation passed during this time. Fogarty’s achievements also included legislation to support medical and public libraries, including NLM.
The John E. Fogarty Papers Profiles in Science site features correspondence, legislative records, speeches, interviews, and photographs from the John E. Fogarty Papers held by the Phillips Memorial Library, Special and Archival Collections at Providence College in Providence, RI, along with photographs and other materials provided by the Fogarty family. Visitors to Profiles in Science can view, for example, photos from Fogarty’s early career, correspondence with constituents and colleagues, and the journal he kept during his Navy service in 1945. The site also includes a 2014 interview with former Congressman and Secretary of Defense Melvin R. Laird, whose bi-partisan partnership with Congressman Fogarty was instrumental in passing many pieces of legislation related to health care and medical research. The interview with Secretary Laird was made possible through the generosity of Mary Fogarty McAndrew. An in-depth historical narrative leads to a wide range of primary source materials that provide a window into John Fogarty’s life and major contributions to the growth of medical research, public health, and social legislation. Visitors may also view a brief chronology of Fogarty’s life, and a further readings page, as well as search and browse the collection.
On October 1, NLM will implement a new method for requesting changes or additions to bibliographic data in LocatorPlus for DOCLINE reporting. The paper-based request form, NLM LocatorPlus Bibliographic Data Addition/Modification Form, will be replaced by a new online request form, DOCLINE Journals Data Addition/Modification Form. There will be a permanent redirect to the new form. Requesters should fill out the form with the required and other relevant information. Supporting documentation may be attached. When the form is complete, click the “Send Message” button to submit the request. Requesters will receive an automated receipt confirmation via email. Another email will be sent when the request has been processed and completed by NLM.
DOCLINE users should begin using the online request form on October 1, 2015. New requests for bibliographic changes and additions must be submitted online. Requests using the paper form, sent by mail or fax, or requests sent to NLM customer service, will not be accepted after October 15, 2015, and will be returned to the sender. NLM anticipates that this change will allow for speedier processing of requests and more accurate data in LocatorPlus and the NLM Catalog. Please note that the policy for addition of journal titles to LocatorPlus has not changed. For further details, refer to the NLM Policy Statement on the Addition of Non-NLM Titles to the NLM LocatorPlus Database for DOCLINE Reporting.
The Bohr Thru video game, developed by the National Library of Medicine (NLM), is designed to teach the Bohr model of the atom, by using a 3-match game style to collect protons, neutrons, and electrons to create the first 18 elements on the periodic table. The model describes how protons and neutrons form an atom’s nucleus, surrounded by electrons in orbit at different energy levels. Element structures are further reinforced during bonus rounds where players that successfully build Bohr models earn “power-ups” to use in the 3-match game. Atom, the game’s mascot, travels along with you and provides fun and interesting facts about the chemical elements. The game supports entry level chemistry curricula. Short (five-minute), meaningful, in-class game sessions are possible.
Bohr Thru was crafted under the technical lead of SIS computer scientist Ying Sun, working with SIS intern Wendy Sparks and the SIS K-12 team, who partnered with Xin Wu, a graduate student at Worcester Polytechnic Institute majoring in Interactive Media and Game Development. Bohr Thru is freely available for iPhone and iPad devices, and can be downloaded from iTunes.
The National Center on Health Services Research and Health Care Technology (NICHSR) of the National Library of Medicine (NLM) has released a new health services research resource on domestic violence, to complement the new NLM exhibition, Confronting Violence, Improving Women’s Lives. The new resource can be found on the Web portal, Health Services Research Information Central (HSR Info Central). It is intended to support health services researchers, policymakers, administrators, and practitioners involved in detection, prevention and treatment services for this underserved and often unnoticed community. The scope of this “topic page” includes Intimate Partner Violence, Reproductive and Sexual Coercion, Child Abuse and Maltreatment, and Elder Abuse.
The Domestic Violence topic page assists researchers, both novice and advanced, by providing detailed search queries for key NLM databases: PubMed, PubMed Health, HSRProj (Health Services Research Projects in Progress), and HSRR (Health Services and Sciences Research Resources). These searches will enable users to readily discover relevant published medical literature, clinical effectiveness research, ongoing HSR projects, and related datasets, instruments and other tools. In addition, the resource identifies important guidelines, assessment instruments and measures, and includes a structured query for the Agency for Healthcare Research and Quality’s National Guidelines Clearinghouse.
In June 2015, NLM proposed discontinuing distribution of its bibliographic records with artificially reconstructed subject strings in CATLINE and SERLINE products, as detailed in the NLM Technical Bulletin article Discontinuing Distribution of Cataloging Bibliographic Records with Artificially Reconstructed Subject Strings—Comment by August 31, 2015. This proposal was sent to the Regional Medical Libraries, MEDLIB, and MEDCAT discussion lists, as well as to subscribers of the NLM MARC21 files. Responses to the proposal were unanimously in favor of discontinuing the distribution of subject strings and having the records in the distributed files match the records as they appear in LocatorPlus and the NLM Catalog.
Therefore, NLM is pleased to announce that beginning with the December 2015 distribution of new records in CATFILE and SERFILE, NLM subject terms will be distributed with topical subjects recorded in 650 $a or 650 $a $x; geographic subjects recorded in 651 $a or 651 $a $x; and publication type/genre terms record in 655 $a. In January 2016, the entire CATFILE and SERFILE databases will be released with these updates made to all the records. Libraries that want their data to be consistent with the NLM files are encouraged to download the full update.
Per capita personal income data is now complete for 1988-2013 in the National Library of Medicine’s TOXMAP beta resource. To overlay income data, navigate to the “Income” tab of the “US Census & Health” window, accessible via the Welcome window or the toolbar at the top of the page, and then select a year from the list. The United States Bureau of Economic Analysis (BEA) is part of the US Department of Commerce. It produces “economic accounts” statistics that enable government and business decision-makers, researchers, and the American public to follow and understand the performance of the nation’s economy. To do this, the BEA collects source data, conducts research and analysis, develops and implements estimation methodologies, and disseminates statistics to the public. TOXMAP is a Geographic Information System (GIS) from the Division of Specialized Information Services of the NLM that uses maps of the United States to help users visually explore data from the US Environmental Protection Agency (EPA)’s Toxics Release Inventory (TRI) and Superfund Program, as well as some non-EPA datasets.
The American Library Association (ALA) Public Programs Office, on behalf of the U.S. National Library of Medicine (NLM), invites applications for Native Voices: Native Peoples’ Concepts of Health and Illness, a traveling exhibition to U.S. libraries. The exhibit explores the interconnectedness of wellness, illness and cultural life for Native Americans, Alaska Natives and Native Hawaiians. Stories drawn from both the past and present examine how health for Native People is tied to community, the land and spirit. Through interviews, Native People describe the impact of epidemics, federal legislation, the loss of land and the inhibition of culture on the health of Native individuals and communities today.
This opportunity is open to public libraries, academic libraries, tribal libraries, tribal college libraries and special libraries. Libraries serving Native populations are especially invited to apply, and partnerships between libraries and Native-serving organizations are encouraged. The exhibition will tour from February 2016 through June 2020 at up to 104 institutions for six-week periods. For full guidelines and exhibit specifications, visit the online application site. Applications are due by November 6!
Selected sites will receive:
- the traveling exhibition for a six-week loan period;
- a $250 programming grant;
- training through a required project webinar and online project support materials; and
- a publicity kit to help with local promotion.
The traveling exhibit requires 35 linear feet of display space and comprises six standing banners, six iPads pre-loaded with video content, and six iPad stands. No internet connection is required, but an electrical connection is needed. Native Voices: Native Peoples’ Concepts of Health and Illness was displayed at the NLM from 2011 to 2015. Visit the site to learn more about content from the exhibition.