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Archive for the ‘NLM Resources’ Category

NLM Resource Update: TOXMAP Now Includes EPA Coal Plant Emissions Data

The National Library of Medicine (NLM) TOXMAP’s new Flash-based beta now includes 2013 coal emissions data published by the US EPA’s Clean Air Markets program. Data was obtained from the Air Markets Program Data (AMPD) tool, a publicly-available data system for searching and downloading data collected as part of EPA’s emissions trading programs. In 2013, about 2.1 billion metric tons of carbon dioxide emissions were attributable to electricity generated from coal.

TOXMAP is a Geographic Information System (GIS) from the National Library of Medicine (NLM) that uses maps of the United States to help users visually explore data from the EPA’s Toxics Release Inventory (TRI) and Superfund Programs.

NLM Cataloging News for 2015

The National Library of Medicine (NLM) adopted the 2015 MeSH vocabulary for cataloging on November 24, 2014. Accordingly, MeSH subject headings in LocatorPlus were changed to reflect the 2015 MeSH vocabulary and appear in that form as of November 24. When year-end processing (YEP) activities are completed in mid-December, the NLM Catalog, MeSH database, and translation tables will be updated to reflect 2015 MeSH. Until then, there will be a hiatus in the addition of new and edited bibliographic records to the NLM Catalog. The Index to the NLM Classification will not reflect 2015 MeSH changes until Spring 2015. In general, the Cataloging Section implemented the vocabulary changes in NLM bibliographic records for books, serials, and other materials, as they were applied for citations in MEDLINE. Following are a few highlights:

Death vs. Mortality
New terms were created: Infant Death and Perinatal Death. These terms complement the existing MeSH terms Infant Mortality and Perinatal Mortality. Death terms are used for biological, physiological, or psychological concepts while mortality terms are used for statistical concepts. There is some overlap with the perinatal terms. Catalogers should follow the annotations carefully.

“Social” Terms
The new term Sociological Factors, formerly an entry term (ET) to the specialty term Sociology, now serves as an overall heading for specific sociological characteristics and phenomena. Other new “social” terms include Social Theory, Social Capital, Social Norms, and Social Skills.

Missions Terms and Religious Personnel
The 2014 MeSH Missions and Missionaries was deleted. For 2015 MeSH, the concept of missions was separated from the persons involved in missionary work. Two new terms were created: Religious Missions and Missionaries. The automated MeSH changes that took place November 22-23 replaced the term Missions and Missionaries with Religious Missions. Cataloging staff will conduct additional manual processing in December to add Missionaries to the set of records that also have PT Biography, Autobiography, or Personal Narratives. Note that the existing term Medical Missions, Official is still available. Religious Personnel was created as an overall term under which Clergy and the new terms Monks and Nuns are treed. Several entry terms were created for the existing term, Clergy: Chaplains, Clerics, Deacons, Imams, Ministers, Pastors, Priests, and Rabbis.

Manufacturing Industry
The new term Manufacturing Industry, formerly an entry term to Industry, now serves as an overall heading for specific manufacturing industries.

Publication Types (PTs) and Related Terms
No new Publication Types were created for 2015.

Thai Clinical Trials Registry Added to the MEDLINE Databank Sources

NLM will be including the databank name for the Thai Clinical Trials Registry (TCTR) starting with citations to articles published in 2014. TCTR is a World Health Organization (WHO) primary clinical trial registry. The MEDLINE Databank Sources webpage has been updated to include this new listing.

Other clinical trial databank sources that appear in the Secondary Source ID [SI] element in the PubMed MEDLINE display include:

  • ClinicalTrials.gov Database (NIH/NLM)
  • Australian New Zealand Clinical Trials Registry
  • Chinese Clinical Trials Registry
  • Clinical Research Information Service, Republic of Korea
  • Clinical Trials Registry – India
  • German Clinical Trials Register
  • EU Clinical Trials Register
  • Iranian Registry of Clinical Trials
  • International Standard Randomized Controlled Trial Number (ISRCTN.org) Register
  • Japan Primary Registries Network
  • The Netherlands National Trial Register
  • Pan African Clinical Trial Register
  • Brazilian Clinical Trials Registry
  • Cuban Public Registry of Clinical Trials
  • Sri Lanka Clinical Trials Registry

AIDSinfo Releases Free Drug App for iOS and Android Devices!

AIDSinfo HIV/AIDS Drug Database screenshotAIDSinfo has announced the release of the AIDSinfo HIV/AIDS Drug Database app. Using data from the AIDSinfo Drug Database, the drug app provides information on more than 100 HIV-related approved and investigational drugs. The information, offered in English and Spanish, is tailored to meet the needs of both health care providers and consumers. The app is designed to automatically refresh when the user is connected to a wireless or cellular data network. The auto update feature eliminates the need to manually update the app to view the most current drug information. In addition, the app works offline, ensuring that health care providers and consumers can access vital drug information anywhere, even in health care facilities that may not have an Internet connection.

Health care providers surveyed on the AIDSinfo website indicated that access to Food and Drug Administration (FDA) labels for HIV-related drugs would be a useful feature of a drug app. Thus FDA drug labels pulled from DailyMed are integrated into the app in an easy-to-navigate format. This feature, coupled with the auto update feature, makes it easy for health care providers to quickly find the latest drug information when seeing patients. In addition, information from the FDA labels is condensed in easy-to-understand summaries in English and Spanish for consumers. The app also includes information on HIV-related investigational drugs for both health care providers and consumers.

Available for both iOS and Android devices, users can personalize the free AIDSinfo Drug App to suit their needs:

  • Receive notifications when content is updated.
  • Bookmark frequently referenced drugs for easy access at any time.
  • Add personal notes to any drug.
  • Select from a menu of alarms to set pill reminders for any drug.

AIDSinfo also has the AIDSinfo Glossary of HIV/AIDS-Related Terms app, available for both iOS and Android devices, which includes English and Spanish definitions of more than 700 HIV/AIDS-related terms.

NLM Resource Update: Radiation Emergency Medical Management (REMM) Website

The following updates and changes were announced in November, 2014, for the National Library of Medicine’s Radiation Emergency Medical Management (REMM) website:

  1. Initial Actions for Responders after Nuclear Detonation: First Receivers: Emergency Department Staff and First Responders: Emergency Medical Service Staff.
  2. Multimedia: many new videos and graphics including 13 new teaching videos from DOE / Transportation Emergency Preparedness Program (TEPP) available on the REMM web site and REMM YouTube channel. Also links to various new CDC teaching materials, such as Videos: Radiation Basics Made Simple.
  3. Protective Actions and Protective Action Guides: page redone with re-organized information and tables. EPA PAG Manual Interim Guidance included.
  4. Burn Triage and Treatment: Thermal Injuries includes links to new references for managing burns in mass casualty incidents with austere conditions.
  5. Legal Advisors for Medical Response to Mass Casualty Incident: new references and 2 new sections including assessment of state and local laws regarding management of persons during radiation incidents including legal authority to decontaminate and quarantine (CDC and partners).
  6. Nuclear Detonation: Weapons, Improvised Nuclear Devices Key References entire list re-organized and updated, including Medical Issues: Planning and Response Practical Guidance and updated Blast injury references.
  7. Dictionary of Radiation Terms: 2 new key references, NCRP Glossary of Radiation Terms and NCRP Acronyms List.
  8. Biodosimetry References updated and re-organized.
  9. Software Tools for Radiation Incident Response includes additional applications listed for biodosimetry, managing incidents, and recording radiation levels.
  10. Incident Command System and Hospital (Emergency) Incident Command System page re-organized with links to HICS, Fifth edition, 2014, expanded to meet the needs of all hospitals, regardless of their size, location or patient care capabilities.
  11. Mental Health Professionals now includes updated references on Psychological First Aid.

New NLM Subject Guide for Genetic/Genomics Information!

The National Library of Medicine has released a new Genetics/Genomics Information subject guide as the latest update in its subject guide series. These guides, based on most frequently asked questions, are starting points for health professionals, researchers, librarians, students, and others. The guide is designed to help you find introductory materials relating to Genetics and Genomics, such as basic features of the human genome and its organization into chromosomes. It is not comprehensive in scope or coverage, particularly for specific genetic conditions or new and improved technologies. The guide provides links to bioinformatics gateways for more genetic information, and points primarily to free electronic items, or records for materials that may be available via your library. The guide has a section of links for professional education, and a section suggesting how to use PubMed to search for citations to published research journal literature for more information about a particular disease or condition. Other published guides in the NLM series include:

NLM will develop more subject guides as needed. NLM welcomes comments, questions, and suggestions about all of the guides.

December 2014 Issue of NIH News in Health Now Available!

Illustration of friends relaxing by a fireplace.Check out the December issue of NIH News in Health, the monthly newsletter bringing you practical health news and tips based on the latest NIH research. In this issue:

  • Feeling Stressed? Stress Relief Might Help Your Health
    Winter holidays—do they fill you with joy or with worries about gift-giving and family gatherings? Do summer vacations leave you relaxed or fretful over travel and money? If you’re feeling stressed out over supposedly fun things, it might be time to reassess. Take a few moments to learn how stress affects your health and what you can do about it.
  • Detecting Rare Disease-Causing Glitches
    For people with suspected rare genetic conditions, getting an accurate diagnosis can be difficult and frustrating. A new study suggests that a fast, powerful technique called whole-exome sequencing can help doctors pinpoint the causes of many hard-to-diagnose genetic conditions.
  • A Priceless Gift: Your Family Health History
    Conditions such as cancer, heart disease, and diabetes often run in families. Tracing the illnesses of your parents, grandparents, and other blood relatives can help your health care practitioner predict your risk for specific disorders. It could suggest vital screening tests and treatments before any disease is evident. That’s why it’s so important to discuss your family’s health history.
  • Featured Website: Go4Life
    This interactive site helps adults, ages 50 and older, to fit more physical activity into their days. A science-based exercise guide, videos, success stories, motivational tips, and free materials can help you get ready, start exercising, and keep moving.

NIH News in Health is available online in both HTML and PDF formats. Print copies are available free of charge for offices, clinics, community centers, and libraries within the U.S. Visit the NIH News in Health Facebook page to suggest topics you’d like to see covered, or share what you find helpful about the newsletter!

Structured Abstracts in MEDLINE: Newly Identified and Mapped Labels Available

The National Library of Medicine (NLM) has updated its list of structured abstract labels. This updated list, along with the NLM-assigned broader category mappings, can be downloaded for free from the Structured Abstracts resource page which also provides NLM guidelines and other background information to assist licensees or researchers.

The Updated Label List and NLM Category Mappings file contains 2,799 labels: 2,454 labels (from the 2013 Label List) and 345 new labels. Each label has a map to one of five corresponding broader NLM Categories (i.e., BACKGROUND, OBJECTIVE, METHODS, RESULTS, or CONCLUSIONS) and an indication of whether the label is classed as an “Ending Label” concept. The 345 new label entries have a timestamp of “|20141113″. This file does not contain labels that map to UNASSIGNED as an NLM Category (see explanation). A grand total of 4,514 citations in PubMed (whether in process, MEDLINE, or PubMed-not-MEDLINE status) were revised to reflect the new labels effective on or about November 13, 2014.

Read more about Structured Abstracts in MEDLINE/PubMed.

PMC Citation Exporter Feature Now Available!

PMC (PubMed Central) is happy to announce the addition of a citation exporter feature. This feature makes it easy to retrieve either styled citations that you can copy/paste into your manuscripts, or to download them into a format compatible with your bibliographic reference manager software.

When viewing a search results page, each result summary will now include a “Citation” link. When, clicked, this will open a pop-up window that you can use to easily copy/paste citations formatted in one of three popular styles: AMA (American Medical Association), MLA (Modern Library Association, or APA (American Psychological Association). In addition, the box has links at the bottom that can be used to download the citation information in one of three machine-readable formats, which most bibliographic reference management software can import. The same citation box can also be invoked from an individual article, either in classic view (with the “Citation” link among the list of formats) or the PubReader view, by clicking on the citation information just below the article title in the banner.

Citation Exporter Feature screenshot

These human-readable styled citations, and machine-readable formats, will be available through a public API. Further details will be provided in another announcement, on the pmc-utils-announce mailing list. Please subscribe to that list if you are interested in updates.

NLM Resource Update: ChemIDplus Drawing Feature

The National Library of Medicine’s (NLM) ChemIDplus resource is a dictionary of over 400,000 chemicals (names, synonyms, and structures). It includes links to NLM and to other databases and resources, including ones to federal, state and international agencies. You can draw a chemical structure and search for similar substances using the ChemIDplus Advanced search interface. This feature also performs similarity and substructure searches. A four-minute tutorial is available for using the drawing feature of ChemIDplus. The ChemIDplus Lite interface is designed for simple searching on name or registry number.