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Archive for the ‘Announcements’ Category

NCBI RefSeq Release 67 Available on FTP

The full RefSeq release 67 is now available on the NCBI FTP site with over 61 million records describing 45,166,402 proteins; 8,163,775 RNAs; and sequences from 41,913 different NCBI TaxIDs. More details about the RefSeq release 67 are included in the release statistics and release notes. In addition, reports indicating the accessions included in the release and the files installed are available.

To subscribe to the ncbi-announce mailing list, visit http://www.ncbi.nlm.nih.gov/mailman/listinfo/ncbi-announce.

NLM Announces New VSAC Tutorial

The National Library of Medicine has announced a new Value Set Authority Center (VSAC) tutorial, Updating Value Sets. The nine-minute tutorial is available as a link from the UMLS Video Learning Resources page, the NLM Distance Education Resources page, and is posted at the NLM YouTube site. Additional tutorials designed to assist users with VSAC and VSAC authoring tools are in development. NLM encourages comments about the tutorial and suggestions for further topics, which may be sent to NLM Customer Service.

The NLM Value Set Authority Center is developed by NLM in collaboration with Office of the National Coordinator for Health IT (ONC) and the Centers for Medicare & Medicaid Services (CMS) to provide searchable access to value sets that are used to define concepts used in clinical quality measures, and to support effective health information exchange and many other biomedical informatics applications and programs. Since October 2013, VSAC also offers the Authoring Tool that allows users to author value sets.

Haz-Map Update

The National Library of Medicine (NLM) has updated Haz-Map with 497 new agents. It now covers 10,133 biological and chemical agents. Haz-Map is an occupational health database designed for health and safety professionals and for consumers seeking information about the health effects of exposure to chemicals and biologicals at work. Haz-Map links jobs and hazardous tasks with occupational diseases and their symptoms. More information is available from the Haz-Map Fact Sheet.

The National Library of Medicine Announces 2014 Association of Health Care Journalists-NLM Fellows

The National Library of Medicine (NLM) and the Association of Health Care Journalists (AHCJ) are pleased to announce the 2014 AHCJ-NLM Fellows. This year’s class features eight reporters and editors representing diverse media backgrounds and interests. The program, now in its sixth year, brings journalists selected by AHCJ to NLM for four days of training in use of NLM’s health information resources, such as PubMed, PubMed Health, Genetics Home Reference, TOXMAP, ClinicalTrials.gov, and MedlinePlus. The Fellows also receive briefings about health care issues, such as the adoption of electronic health records by patients and health care providers, as well as consumer health resources provided by the National Cancer Institute. New in 2014, the Patient-Centered Outcomes Research Institute (PCORI) will update the AHCJ-NLM Fellows about innovative health care issues, such as comparative effectiveness research.

The 2014 AHCJ-NLM Fellows are:

  • Karen Bouffard, health care writer, The Detroit News. Bouffard was a 2013 National Health Journalism Fellow with the University of Southern California’s Annenberg School of Journalism.
  • Matthew Glasser, health and medical producer, NBC Southern California. Glasser is an Emmy Award-winning journalist and was the co-creator and executive producer of NurseTV and Healthcare Heroes.
  • Sarah Karlin, senior writer, The Pink Sheet and The Pink Sheet DAILY. Karlin formerly was the FDANews’ congressional and generic drugs editor.
  • Kimberly Leonard, health reporter and producer, U.S. News & World Report. Leonard was a health reporter with the Center for Public Integrity prior to joining U.S. News & World Report.
  • Cheryl Platzman Weinstock, freelance health/science writer, who specializes in women’s health issues. Weinstock’s work frequently appears in the New York Times, Women’s Day, and the Oprah Magazine. She contributed to the New York Times’ Pulitzer Prize-winning coverage of 9/11.
  • Marie Powers, staff writer, BioWorld Today. Powers was part of the BioWorld Today team, which received the Best Daily Publication award in 2013 and 2014 from the Specialized Information Publishers Association.
  • Cindy Sharp, health and medical reporter, Associated Press Television and Online Video. Sharp previously worked for MSNBC and Tribune Broadcasting.
  • J.K. Wall, health care reporter, Indianapolis Business Journal, and The Dose, a blog on health care finance. Wall worked as a business reporter at The Indianapolis Star before joining the Indianapolis Business Journal.

NN/LM OERC Announces New Webinar: “Evaluation 2.0!”

The NN/LM Outreach Evaluation Resource Center (OERC) has developed the new webinar Evaluation 2.0: Trends, New Ideas, Cool Tools,” which debuted on August 21 as one of the NN/LM Greater Midwest Region’s monthly Lake Effect webinars. The new webinar presents emerging trends in evaluation practice that emphasize stakeholder interaction and social engagement. It also covers popular tools and methods that allow you to draw others into the evaluation process and raise the visibility of your program or services. A recording of the one-hour session is available for viewing.

NN/LM Ending Support for Internet Explorer 8

Due to recent software updates on nnlm.gov, Internet Explorer 8 is no longer supported. Some read-only sections of nnlm.gov will continue to be available via IE8. However, anyone using IE8 will probably not be able to submit assignments in online courses utilizing the NN/LM Moodle framework, and may not even be able to access and log into Moodle courses. Other nnlm.gov services that require data to be posted to the server are also likely to fail. In addition, DOCLINE will not support IE8 after the end of 2014. Please visit the NN/LM System Requirements page to see a complete list of supported browsers. For best usability, NLM recommends that libraries should begin talking to their local IT departments about upgrading their browsers to at least Internet Explorer 10.

Starting January 12, 2016, Microsoft will drop support, including security updates, for older Internet Explorer browser versions. Only the most recent version of IE for a supported operating system will receive technical support and security updates. Microsoft’s Stay up-to-date with Internet Explorer blog page provides a good explanation of why IE users should upgrade to the most current version.

NIH Seeks Input on Information Resources for Data-Related Standards Widely Used in Biomedical Science

The National Institutes of Health (NIH) has issued a Request for Information (RFI) seeking comments and ideas to inform the creation of an NIH Standards Information Resource (NSIR) that would collect, organize, and make available to the public trusted, systematically organized, and curated information about data-related standards. This resource would focus on those standards that are widely used in biomedical research and related activities. The main purpose of the NSIR would be to help a variety of biomedical users such as researchers, clinicians, data curators, and informaticians, among others, identify and choose data-related standards that are best suited to their needs.

NIH seeks responses to the RFI from biomedical researchers, librarians and information scientists, bioinformaticians, publishers, and other interested individuals. All responses must be submitted electronically to BD2K_NSIR_RFI@mail.nih.gov by September 30, 2014. Please include the Notice number NOT-CA-14-053 in the subject line. Responses to this RFI Notice are voluntary. The submitted information will be reviewed by the NIH staff. Submitted information will be considered confidential.

NIH Issues Finalized Policy on Genomic Data Sharing

Genomic research advances our understanding of factors that influence health and disease, and sharing genomic data provides opportunities to accelerate that research through the power of combining large and information-rich datasets. To promote sharing of human and non-human genomic data and to provide appropriate protections for research involving human data, the National Institutes of Health (NIH) issued the Genomic Data Sharing (GDS) Policy on August 27, 2014. The GDS Policy takes effect for grant applications with due dates on or after January 25, 2015, for contracts submitted on or after January 25, 2015, and for intramural research projects generating genomic data on or after January 25, 2015. NIH has also issued a press release regarding the GDS Policy. A publication describing the use and impact of the NIH database for Genotypes and Phenotypes (dbGaP) data under the Policy for Sharing of Data Obtained in NIH Supported or Conducted Genome-Wide Association Studies, from 2007 through 2013, has been published in Nature Genetics.

Upcoming NCBI Discovery Workshops at UC Davis and UC Berkeley!

NCBI Discovery Workshops, consisting of four 2.5-hour hands-on training sessions emphasizing NCBI resources such as BLAST and Nucleotide, will be presented by NCBI staff at the University of California, Davis, on September 15-16, and at the University of California, Berkeley, on September 17-18:

  • Session 1: Navigating NCBI Molecular Data Through the Integrated Entrez System. 9 am – 11:30 am, 9/15 (UC Davis) & 9/17 (UC Berkeley)
  • Session 2: NCBI Genomes, Assemblies and Annotation Products: Microbes to Human. 1 pm – 3:30 pm, 9/15 (UC Davis) & 9/17 (UC Berkeley)
  • Session 3: Advanced NCBI BLAST. 9 am – 11:30 am, 9/16 (UC Davis) & 9/18 (UC Berkeley)
  • Session 4: Gene Expression Resources at NCBI. 1 pm – 3:30 pm, 9/16 (UC Davis) & 9/18 (UC Berkeley)

​For more information or to register:

For Questions:

NLM Launches Emergency Access Initiative for Healthcare Professionals Fighting Ebola Outbreak

The National Library of Medicine (NLM) Emergency Access Initiative (EAI) has been activated to support healthcare professionals working on the Ebola public health emergency in West Africa. The EAI is a collaborative partnership between NLM and participating publishers to provide free access to full-text from over 650 biomedical journals and over 4,000 reference books and online databases to healthcare professionals and libraries affected by disasters. It serves as a temporary collection replacement and/or supplement for libraries affected by disasters that need to continue to serve medical staff and affiliated users. It is also intended for medical personnel responding to the specified disaster. EAI is not an open access collection. It is only intended for those affected by the disaster or assisting the affected population. If you know of a library or organization involved in healthcare efforts in response to the Ebola outbreak, please let them know of this service. EAI was activated four times in the past, including following the earthquake and subsequent cholera epidemic in Haiti, flooding in Pakistan and the earthquake and tsunami in Japan.

NLM thanks the numerous participating publishers for their generous support of this initiative: American Academy of Pediatrics, American Association for the Advancement of Science, American Chemical Society, American College of Physicians, American Medical Association, American Society of Health-Systems Pharmacists, ASM Press, B.C. Decker, BMJ, EBSCOHost, Elsevier, FA Davis, Mary Ann Liebert, Massachusetts Medical Society, McGraw-Hill, Merck Publishing, Oxford University Press, People’s Medical Publishing House, Springer, University of Chicago Press, Wiley and Wolters Kluwer.

Resources on Ebola

NLM has several other resources that will be helpful for people working on Ebola:

HHS agencies, including CDC and ASPR, also provide the latest Ebola information available through social media, including Twitter@phegov, @CDCgov, @CDCEmergency and Facebook Public Health Emergency, CDC, CDC Emergency Preparedness and Response. The CDC also has a comprehensive set of resources on its Ebola Hemorrhagic Fever web page.