The HIV-1, human interaction database has been updated and is now on an improved page. The improved interface includes help documentation and supports structured queries against Gene, as well as browsing, filtering and downloading the protein and replication interaction data sets. The most recent data release (June 2014) includes 12,785 HIV-1, human protein-protein interactions for 3,142 human genes and 1,316 replication interactions for 1,250 human genes. The HIV-1, human interactions project, collates published reports of two types of interactions – HIV-1, human protein interactions, and human gene knock-downs that affect virus replication which are reported as “replication interactions.”
Archive for the ‘Announcements’ Category
The National Library of Medicine has announced that it is now a participating institution of the Commons on Flickr. The Commons on Flickr was launched in 2008 as a pilot project in partnership with the Library of Congress in order to increase access to publicly-held photography collections and to invite the general public to provide information about the collections. The National Library of Medicine now joins a distinguished, international group of nearly one hundred cultural institutions in providing greater access to its collection and inviting public use of and engagement with these images held in the public trust through The Commons on Flickr.
Images from the historical collections of the History of Medicine Division, including public health posters, book illustrations, photographs, fine art work, and ephemera, have always been available through the Images from the History of Medicine database, which includes over 70,000 images illustrating the social and historical aspects of medicine dated from the 15th to the 21st century. Now, they can also be accessed through the Commons on Flickr via a photostream, where visitors can contribute information about the images by adding comments and tags. By adding a new way to see its collections through Flickr NLM hopes to learn more details about its collections, create dialog about its holdings, and share knowledge with the public. The collection of images on Flickr will continue to grow so visitors can check back regularly for new content!
On September 18 the National Library of Medicine launched a newly redesigned DailyMed web site. DailyMed provides trustworthy information about marketed drugs in the United States, and is the official provider of Food and Drug Administration (FDA) label information. The web site provides a standard, comprehensive, up-to-date, look-up and download resource of medication content and labeling found in medication package inserts. Since 2005, when DailyMed was first launched, its usage has increased significantly.
Based on the needs and feedback received from the public, NLM began redesigning the DailyMed web site in 2013. The new site is a responsive design which is now easily accessible on all types of devices, adjusting and optimizing automatically for smart phones to large screen desktop displays. Based on the size of the screen, content will relocate, images will resize, the layout will change, and even the navigation will adjust, to deliver an exceptional user experience no matter what device is being used to view the site.
In addition to responsive design, the following new features are available:
- Enhanced Search Results to include displaying of NDC Codes, Pill Images, and Package Label Images on the search result page. The information will help users easily identify the drug label. The thumbnail images of drugs, magnification feature, accordions, etc. provide a more user friendly experience.
- Improved user interface by displaying an accordion-style data presentation, so users don’t have to scroll through the entire label.
- Simplified page navigation and added definitions & tooltips for industry-specific phrases.
- A dedicated News page and Article & Presentation Page for users to easily access DailyMed and NLM/FDA drug-related news.
Beginning on September 4, 2014, the MeSH Browser is being updated each business day. The MeSH XML and ASCII format files for Supplementary Concept Records (SCRs) will be available on this same Monday through Friday schedule starting the week of September 15, 2014. Prior to this change, the MeSH Browser and MeSH XML and ASCII files for SCRs were updated and made available once per week.
This new update schedule releases new and edited SCRs, mostly for chemicals and drugs, in a more timely way for use by both indexers and searchers. Descriptors and qualifiers are changed only on an annual basis.
The full RefSeq release 67 is now available on the NCBI FTP site with over 61 million records describing 45,166,402 proteins; 8,163,775 RNAs; and sequences from 41,913 different NCBI TaxIDs. More details about the RefSeq release 67 are included in the release statistics and release notes. In addition, reports indicating the accessions included in the release and the files installed are available.
- News story
- RefSeq release 67 on FTP
- Release statistics
- Release notes
- Accessions included report
- Files installed report
To subscribe to the ncbi-announce mailing list, visit http://www.ncbi.nlm.nih.gov/mailman/listinfo/ncbi-announce.
The National Library of Medicine has announced a new Value Set Authority Center (VSAC) tutorial, Updating Value Sets. The nine-minute tutorial is available as a link from the UMLS Video Learning Resources page, the NLM Distance Education Resources page, and is posted at the NLM YouTube site. Additional tutorials designed to assist users with VSAC and VSAC authoring tools are in development. NLM encourages comments about the tutorial and suggestions for further topics, which may be sent to NLM Customer Service.
The NLM Value Set Authority Center is developed by NLM in collaboration with Office of the National Coordinator for Health IT (ONC) and the Centers for Medicare & Medicaid Services (CMS) to provide searchable access to value sets that are used to define concepts used in clinical quality measures, and to support effective health information exchange and many other biomedical informatics applications and programs. Since October 2013, VSAC also offers the Authoring Tool that allows users to author value sets.
The National Library of Medicine (NLM) has updated Haz-Map with 497 new agents. It now covers 10,133 biological and chemical agents. Haz-Map is an occupational health database designed for health and safety professionals and for consumers seeking information about the health effects of exposure to chemicals and biologicals at work. Haz-Map links jobs and hazardous tasks with occupational diseases and their symptoms. More information is available from the Haz-Map Fact Sheet.
The National Library of Medicine (NLM) and the Association of Health Care Journalists (AHCJ) are pleased to announce the 2014 AHCJ-NLM Fellows. This year’s class features eight reporters and editors representing diverse media backgrounds and interests. The program, now in its sixth year, brings journalists selected by AHCJ to NLM for four days of training in use of NLM’s health information resources, such as PubMed, PubMed Health, Genetics Home Reference, TOXMAP, ClinicalTrials.gov, and MedlinePlus. The Fellows also receive briefings about health care issues, such as the adoption of electronic health records by patients and health care providers, as well as consumer health resources provided by the National Cancer Institute. New in 2014, the Patient-Centered Outcomes Research Institute (PCORI) will update the AHCJ-NLM Fellows about innovative health care issues, such as comparative effectiveness research.
The 2014 AHCJ-NLM Fellows are:
- Karen Bouffard, health care writer, The Detroit News. Bouffard was a 2013 National Health Journalism Fellow with the University of Southern California’s Annenberg School of Journalism.
- Matthew Glasser, health and medical producer, NBC Southern California. Glasser is an Emmy Award-winning journalist and was the co-creator and executive producer of NurseTV and Healthcare Heroes.
- Sarah Karlin, senior writer, The Pink Sheet and The Pink Sheet DAILY. Karlin formerly was the FDANews’ congressional and generic drugs editor.
- Kimberly Leonard, health reporter and producer, U.S. News & World Report. Leonard was a health reporter with the Center for Public Integrity prior to joining U.S. News & World Report.
- Cheryl Platzman Weinstock, freelance health/science writer, who specializes in women’s health issues. Weinstock’s work frequently appears in the New York Times, Women’s Day, and the Oprah Magazine. She contributed to the New York Times’ Pulitzer Prize-winning coverage of 9/11.
- Marie Powers, staff writer, BioWorld Today. Powers was part of the BioWorld Today team, which received the Best Daily Publication award in 2013 and 2014 from the Specialized Information Publishers Association.
- Cindy Sharp, health and medical reporter, Associated Press Television and Online Video. Sharp previously worked for MSNBC and Tribune Broadcasting.
- J.K. Wall, health care reporter, Indianapolis Business Journal, and The Dose, a blog on health care finance. Wall worked as a business reporter at The Indianapolis Star before joining the Indianapolis Business Journal.
The NN/LM Outreach Evaluation Resource Center (OERC) has developed the new webinar Evaluation 2.0: Trends, New Ideas, Cool Tools,” which debuted on August 21 as one of the NN/LM Greater Midwest Region’s monthly Lake Effect webinars. The new webinar presents emerging trends in evaluation practice that emphasize stakeholder interaction and social engagement. It also covers popular tools and methods that allow you to draw others into the evaluation process and raise the visibility of your program or services. A recording of the one-hour session is available for viewing.
Due to recent software updates on nnlm.gov, Internet Explorer 8 is no longer supported. Some read-only sections of nnlm.gov will continue to be available via IE8. However, anyone using IE8 will probably not be able to submit assignments in online courses utilizing the NN/LM Moodle framework, and may not even be able to access and log into Moodle courses. Other nnlm.gov services that require data to be posted to the server are also likely to fail. In addition, DOCLINE will not support IE8 after the end of 2014. Please visit the NN/LM System Requirements page to see a complete list of supported browsers. For best usability, NLM recommends that libraries should begin talking to their local IT departments about upgrading their browsers to at least Internet Explorer 10.
Starting January 12, 2016, Microsoft will drop support, including security updates, for older Internet Explorer browser versions. Only the most recent version of IE for a supported operating system will receive technical support and security updates. Microsoft’s Stay up-to-date with Internet Explorer blog page provides a good explanation of why IE users should upgrade to the most current version.