Archive for 2014
The National Institutes of Health (NIH) launched two more funding opportunities to support NIH Big Data to Knowledge (BD2K) Initiative Research Education for developing educational resources for information professionals.
This funding announcement seeks applications for the development of a Massive Open Online Course (MOOC) that covers a comprehensive set of topics related to the management of biomedical Big Data. The primary audience for this course is librarians and information specialists, who could use these materials as the basis of training and services to graduate students, faculty, research staff and administrators at their organizations. However, the resource should also be usable by any of these audiences for self-instruction. The application due date is March 17, 2015.
This funding announcement seeks applications for the development of curriculum modules that can be used by librarians and other information specialists to prepare researchers, graduate students and research staff to be full participants in the global community that maintains and accesses digitally-stored biomedical Big Data. The application due date is March 17, 2015.
The National Library of Medicine (NLM) is pleased to announce the future plans of its 2013-2014 class of Associate Fellows. The Associate Fellowship Program (AFP) is a one-year postgraduate training program with an optional second year. This competitive program is designed to provide a broad foundation in health sciences information services and to prepare librarians for future leadership roles in health sciences libraries and health services research. This group of Associate Fellows ended the first year of the fellowship in August 2014, with two taking positions at health sciences libraries, and three continuing on for a second year of the Associate Fellowship program in libraries in Maryland and Arizona.
The NN/LM PSR welcomes Nicole Pettenati to the region, where she will spend the second year of the NLM Associate Fellowship at Mayo Clinic in Arizona. While at NLM, during the first year of the Fellowship, Ms. Pettenati worked on several projects including strategic planning and development of the NLM History of Medicine Division’s presence on Pinterest, tracking legislation of interest to NLM and other stakeholders, and developing a strategy for management of internal video files.
The National Library of Medicine (NLM) has updated its list of structured abstract labels. This updated list, along with the NLM-assigned broader category mappings, can be downloaded for free from the Structured Abstracts resource page which also provides NLM guidelines and other background information to assist licensees or researchers.
The Updated Label List and NLM Category Mappings file contains 2,799 labels: 2,454 labels (from the 2013 Label List) and 345 new labels. Each label has a map to one of five corresponding broader NLM Categories (i.e., BACKGROUND, OBJECTIVE, METHODS, RESULTS, or CONCLUSIONS) and an indication of whether the label is classed as an “Ending Label” concept. The 345 new label entries have a timestamp of “|20141113″. This file does not contain labels that map to UNASSIGNED as an NLM Category (see explanation). A grand total of 4,514 citations in PubMed (whether in process, MEDLINE, or PubMed-not-MEDLINE status) were revised to reflect the new labels effective on or about November 13, 2014.
Read more about Structured Abstracts in MEDLINE/PubMed.
PMC (PubMed Central) is happy to announce the addition of a citation exporter feature. This feature makes it easy to retrieve either styled citations that you can copy/paste into your manuscripts, or to download them into a format compatible with your bibliographic reference manager software.
When viewing a search results page, each result summary will now include a “Citation” link. When, clicked, this will open a pop-up window that you can use to easily copy/paste citations formatted in one of three popular styles: AMA (American Medical Association), MLA (Modern Library Association, or APA (American Psychological Association). In addition, the box has links at the bottom that can be used to download the citation information in one of three machine-readable formats, which most bibliographic reference management software can import. The same citation box can also be invoked from an individual article, either in classic view (with the “Citation” link among the list of formats) or the PubReader view, by clicking on the citation information just below the article title in the banner.
The National Library of Medicine’s (NLM) ChemIDplus resource is a dictionary of over 400,000 chemicals (names, synonyms, and structures). It includes links to NLM and to other databases and resources, including ones to federal, state and international agencies. You can draw a chemical structure and search for similar substances using the ChemIDplus Advanced search interface. This feature also performs similarity and substructure searches. A four-minute tutorial is available for using the drawing feature of ChemIDplus. The ChemIDplus Lite interface is designed for simple searching on name or registry number.
The Department of Health and Human Services (HHS) and the National Institutes of Health (NIH) are releasing for public comment two proposals to increase the transparency of clinical trials via information submitted to ClinicalTrials.gov, a publicly accessible database operated by the National Library of Medicine. The first is a Notice of Proposed Rulemaking (NPRM) that describes proposed regulations for registering and submitting summary results of certain clinical trials to ClinicalTrials.gov in compliance with Title VIII of the Food and Drug Administration Amendments Act of 2007 (FDAAA). A major proposed change from current requirements is the expansion of the scope of clinical trials required to submit summary results to include trials of unapproved, unlicensed, and uncleared products. The second proposal is a draft NIH policy that would extend the similar registration and reporting requirements to all clinical trials funded by NIH, regardless of whether they are subject to FDAAA. Both proposals aim to improve public access to information about specified clinical trials, information that is not necessarily available from other public sources. The proposals are not intended to affect the design or conduct of clinical trials or define what type of data should be collected during a clinical trial. Rather, they aim to ensure that information about clinical trials and their results are made publicly available via ClinicalTrials.gov. A summary of the proposed changes is available from the NIH.
The public may comment on any aspect of the NPRM or proposed NIH Policy. Written comments on the NPRM should be submitted to docket number NIH-2011-0003. Commenters are asked to indicate the specific section of the NPRM to which each comment refers. Written comments on the proposed NIH Policy should be submitted electronically to the Office of Clinical Research and Bioethics Policy, Office of Science Policy, NIH, via email; mail at 6705 Rockledge Drive, Suite 750, Bethesda, MD 20892; or by fax at 301-496-9839, by February 19, 2015. All comments will be considered in preparing the final rule and final NIH Policy.
As part of its IMLS-funded Health Happens in Libraries program, OCLC is seeking up to five public libraries wishing to collaborate with a local partner to develop and implement community health activities. These activities, to be conducted with the Health Happens in Libraries team from January through July 2015, will support the goals of each participating library and their partner(s), and enhance public library capacity to advance health and wellness priorities in the communities they serve. Activities may include a range of services, such as a workshop on healthy family meal planning, or training to patrons seeking reliable online health information. In addition to stipend support for any related travel, participating libraries will also be eligible to receive $500 for supplies, materials, or other necessary expenses to meet their goals. Actual time commitment will ultimately be proportional to the engagement goals of each library community
The Participant Overview provides a full description of this opportunity, including how to submit a statement of interest for your library to be considered for this exciting work. If interested in participating in this 7-month project, please submit a statement of interest by 5:00 PM PST Tuesday, December 9, 2014. Selected libraries will be notified by December 31, 2014. A panel will review all statements in an effort to select a variety of libraries, representing diverse perspectives and communities. Questions about the program may be directed to the Project Coordinator, Liz Morris.
In June, the University of Nevada School of Medicine welcomed Mary Shultz as the new director of the Savitt Medical Library in Reno. She will also oversee the medical library operations and programs at the Las Vegas campus of the School of Medicine. Mary was previously at the University of Illinois at Chicago (Urbana regional site), where she was regional head librarian and worked extensively with learners, faculty and community partners. She received her master’s degree in library and information science from the University of Illinois at Urbana-Champaign in 1997 before first working as a resident librarian at the University of Illinois Library of the Health Sciences in Chicago from 1997 to 1999, and then as the assistant health sciences librarian at the Library of the Health Sciences-Urbana from 1999-2007. In the assistant role, Mary was responsible for all instruction and reference services, and in collaboration with faculty from the Colleges of Medicine and Nursing, built a program of course-integrated library instruction across the curricula. For the last seven years, she was the regional head and was responsible for all operational aspects of the site library.
Mary has a strong history of collaborating with faculty from Medicine and Nursing, the local hospital libraries, and her colleagues across the University of Illinois library system. Her research interests include the accuracy of mapping mechanisms of search terms to the Medical Subject Headings and the relationship to information loss. She has published on this and other topics in peer-reviewed journals and has regularly presented at the Medical Library Association’s annual meetings.
Please join us in welcoming Mary to the region!
The National Library of Medicine announces the release of a new Turning the Pages virtual book on its Web site, via iPad App, and in kiosks onsite at the NLM. The new project features selections from a colorfully illustrated 19th-century manuscript from Mongolia on astrology and divination following Mongolian and Tibetan Buddhist traditions.
This Turning the Pages project includes a selection of 15 images from the over 40 pages in the Mongolian Book of Astrology and Divination, along with a curator’s descriptive text, putting many divine figures and astronomical charts into context for a modern Western audience. For instance, many of the astrological factors calculable among the charts corresponded to different organs of the body or life events such as birth, old age, illness, and death. The ultimate goal was keeping one’s life in balance with the cosmos, using the calculations in this manuscript to choose an auspicious time to begin a new project, conceive a child, receive a treatment, or even remove the corpse of a loved one from one’s home.
Launched at the NLM in 2001, Turning the Pages represents an ongoing collaboration between research engineers at the Lister Hill National Center for Biomedical Communications and curators and historians at the NLM’s History of Medicine Division, to help make the NLM’s rare and unique history of medicine collections widely available to the public. To date, Turning the Pages has offered the public access to a wide range of early printed books and manuscripts that span centuries, cover topics from surgery and anatomy to botany and horse veterinary medicine, and originate from places as diverse as Iran, Japan, Egypt, Italy, and now Mongolia. The NLM’s copy of Mongolian Book of Astrology and Divination is just one item from its Buddhist Mongolian and Tibetan materials relating to health and disease. The Library holds one of the world’s largest collections of early books relating to East Asian health and medicine.
The National Library of Medicine (NLM) has released a new version of Chemical Hazards Emergency Medical Management (CHEMM). CHEMM is a Web-based resource that can be downloaded in advance to Windows and Mac computers to ensure availability during an event if the Internet is not accessible. CHEMM’s content is also integrated into the NLM Wireless Information System for Emergency Responders (WISER), which is Web-based and downloadable to Windows computers. CHEMM’s content is also available in WISER’s iOS and Android apps. The new CHEMM content will be incorporated into the next release of WISER.
New or updated content in CHEMM includes:
- Updated and enhanced content on Decontamination Procedures, Discovering the Event, and Training and Education
- An NIH CounterACT program funded database with information on twenty-two medical countermeasures (including efficacy, relevant publications, research in progress, FDA and other global regulatory status information)
- Content for how emergency responders can recognize and handle events dealing with toxic gases generated by the combinations of consumer products or common household chemicals
- A workshop report describing toxic chemical syndromes, or toxidromes, that lays the foundation for a consistent lexicon for use in CHEMM and for other uses that, if adopted widely, will improve response to chemical mass exposure incidents
- A toxidromes outreach plan whose goal is to raise widespread awareness and encourage use of the toxidromes throughout the stakeholder community, and
- An evaluation and validation plan for CHEMM’s Intelligent Syndromes Tool (CHEMM-IST) that, once completed, will move CHEMM-IST from its current state as a prototype to a product ready for use in an operational response environment.
For more information see the “What’s New on CHEMM?” section of CHEMM.