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Archive for the ‘Technology’ Category

My NCBI – ORCID Author Data Integration with SciENcv

Friday, September 26th, 2014

SciENcv users will soon be able to create SciENcv profiles using the data stored in their ORCID records. By linking an ORCID account to an NCBI account, users will be able to create SciENcv profiles using the personal statement, education, employment, publications and research awards information stored in ORCID records.

http://www.nlm.nih.gov/pubs/techbull/so14/so14_sciencv_orcid.html

NCBI RefSeq Release 67 Available on FTP

Friday, September 26th, 2014

The full RefSeq release 67 is now available on the NCBI FTP site with over 61 million records describing 45,166,402 proteins; 8,163,775 RNAs; and sequences from 41,913 different NCBI TaxIDs. More details about the RefSeq release 67 are included in the release statistics and release notes. In addition, reports indicating the accessions included in the release and the files installed are available.

To subscribe to the ncbi-announce mailing list, visit http://www.ncbi.nlm.nih.gov/mailman/listinfo/ncbi-announce.

Check Out the Latest Issue of the MAReport

Sunday, September 21st, 2014

NISO September Virtual Conference: Library Data in the Cloud

Sunday, September 21st, 2014

Virtual conferences are 5-6 hour conferences held online in webinar-like formats, with occasional breaks in the schedule for participants. The longer length allows the depth of coverage of a conference coupled with the convenience of a webinar.

Date: September 24, 2014

Time: 11:00 am – 5:00 pm Eastern

Event webpage: http://www.niso.org/news/events/2014/virtual/data_in_the_cloud/

ABOUT THE VIRTUAL CONFERENCE

Cloud computing seems to be a growing trend, no matter the industry or type of information system. Library systems are no stranger to this trend; just about every major systems provider has a cloud-based solution available. While many factors for selecting a cloud system are similar to those for any information system decision, there are some special issues and challenges for storing your data in the cloud, including security, privacy, ownership, interoperability, and transferability.

In NISO’s September 24 virtual conference, Library Data in the Cloud—to be held from 11:00 am to 5:00 pm EDT—libraries that have explored the use of cloud systems will discuss their experiences, their concerns, issues encountered, and lessons learned.

TOPICS AND SPEAKERS

Keynote Speaker – Rick McMullen, PhD, Director of the Arkansas High Performance Computing Center and Research Professor of Computer Science and Computer Engineering, University of Arkansas

Integrated Library Systems Moving to the Cloud – Joseph R. Matthews, author and library consultant

Big Data Processing in the Cloud: a Hydra/Sufia Experience – Zhiwu Xie, Ph.D., Associate Professor and Technology Development Librarian, Center for Digital Research and Scholarship University Libraries, Virginia Tech

Cloud Computing in Library Instruction – Laura Fargo McKinnon, JD, MLIS, Department Head, Research & Instructional Services, University of North Texas Libraries and Kris Helge, Scholarly Communications Librarian, University of North Texas Libraries

Data Publication and Sharing with Globus – Steve Tuecke, Deputy Director, Computation Institute, University of Chicago; Co-Founder of the Globus Project

eResource Management in the Cloud – Jeffrey D. Kuskie, Electronic Resource Manager, Dr. C.C. and Mabel L. Criss Library, University of Nebraska at Omaha

Security and Data Ownership in the Cloud – Andrew K. Pace, Executive Director, Networked Library Services, OCLC; Councilor-at-large, American Library Association

Privacy in the Cloud – Speaker TBA

Conference Roundtable – Discussion with speakers and Q&A

REGISTRATION

Registration is per site (access for one computer) and closes at 4:00 pm Eastern on September 24, 2014 (the day before the virtual conference). Discounts are available for NISO members and students. All virtual conference registrants receive access to the recorded version for one year.

Can’t make it on the day of the virtual conference? All registrants receive access to the recorded version for one year. Take advantage of the Virtual Conference subscription package (www.niso.org/news/events/2014/virtual/#subscription) for all six of the 2014 Virtual Conferences and save 33%. (Previously held 2014 virtual conferences available in recorded versions.)

For more information and to register, visit the event webpage: http://www.niso.org/news/events/2014/virtual/data_in_the_cloud/

Archive Available for Adding to Your Teaching Toolbox

Sunday, September 21st, 2014

Archive now available: http://nnlm.gov/mar/training/boost_recordings.html

Presenters:

  • Sharon Dennis, Assistant Director, NN/LM National Training Center (NTC)
  • Rebecca Brown, Trainer, NN/LM National Training Center (NTC)
  • Jessi Van Der Volgen, Trainer, NN/LM National Training Center (NTC)

Summary:  Three trainers from the National Library of Medicine Training Center (NTC) will present a few our favorite teaching tips and techniques for both in-person and online classes.   Sharon Dennis will discuss possibilities for applying “gamification” principles as a tool to motivate class participants.  Jessi Van Der Volgen will share four strategies for adding meaningful interaction to your online or in-person classes, and examples of each.  Rebecca Brown will share free tools you can use to develop a class and a social media alternative to a course discussion board.

Adding to Your Teaching Toolkit (Boost Box session)

Monday, September 8th, 2014

MAR offers 1 MLA Continuing Education (CE) credit per session—details will be provided at the end of the session.

Presenters:

  • Sharon Dennis, Assistant Director, NN/LM National Training Center (NTC)
  • Rebecca Brown, Trainer, NN/LM National Training Center (NTC)
  • Jessi Van Der Volgen, Trainer, NN/LM National Training Center (NTC)

Date / Time:  Tuesday, September 9, 2014 / Noon – 1 pm (ET)

Where:            https://webmeeting.nih.gov/boost2/

Online / No Registration Required

 

Summary:  Three trainers from the National Library of Medicine Training Center (NTC) will present a few our favorite teaching tips and techniques for both in-person and online classes.   Sharon Dennis will discuss possibilities for applying “gamification” principles as a tool to motivate class participants.  Jessi Van Der Volgen will share four strategies for adding meaningful interaction to your online or in-person classes, and examples of each.  Rebecca Brown will share free tools you can use to develop a class and a social media alternative to a course discussion board.

Check Out the Latest Issue of the MAReport

Monday, September 8th, 2014

National Medical Librarians Month: MAR Wants to Make You a Star – Win a Trip to MLA 2015!

Monday, September 8th, 2014

October is National Medical Librarians Month.  MAR would like to acknowledge the valuable work our medical librarians do by sharing your accomplishments, programs or value-added services with others.

We are asking you to send us your stories about any unique programs you developed, any outreach to the community you participated in, or any other value added services you offer to your organization or institution.

With your permission, we will share your stories on the MAR website throughout the month of October. Anyone who has made a submission by Oct. 4 will be entered into a random drawing to receive an award to cover registration and airfare to MLA 2015 in Austin, Texas.

We can’t wait to make you a “Star” – submit your story to nnlmmar@pitt.edu today!  (Multiple entries may be received from the same library, but please only one entry per person.)

MeSH on Demand Update: How to Find Citations Related to Your Text

Monday, September 8th, 2014

In May 2014, NLM introduced MeSH on Demand, a Web-based tool that suggests MeSH terms from your text such as an abstract or grant summary up to 10,000 characters using the MTI (Medical Text Indexer) software. For more background information, see the NLM Technical Bulletin, MeSH on Demand Tool: An Easy Way to Identify Relevant MeSH Terms.

The MeSH on Demand results page is now organized into three sections:

Section 1: Original input text (with the length of the input text)

Section 2: MeSH terms with links to the MeSH Browser

Section 3: Top ten PubMed/MEDLINE citations related to your text

The new MeSH on Demand feature displays the PubMed ID (PMID) for the top ten related citations in PubMed that were also used in computing the MeSH term recommendations. To access this new feature, start from the MeSH on Demand homepage, add your text, such as a project summary, into the box labeled “Text to be Processed.” Then, click the “Find MeSH Terms” button. MeSH on Demand lists the top ten related citation PMIDs from PubMed/MEDLINE. Each PMID is hyperlinked to that citation in PubMed. This new feature in MeSH on Demand is a result of user feedback received from our initial MeSH on Demand release. Users are encouraged to continue to send questions, suggestions, and comments to: NLMMESH-MOD@mail.nih.gov.

NIH Issues Finalized Policy on Genomic Data Sharing

Monday, September 8th, 2014

Genomic research advances our understanding of factors that influence health and disease, and sharing genomic data provides opportunities to accelerate that research through the power of combining large and information-rich datasets. To promote sharing of human and non-human genomic data and to provide appropriate protections for research involving human data, the National Institutes of Health (NIH) issued the Genomic Data Sharing (GDS) Policy on August 27, 2014. The GDS Policy takes effect for grant applications with due dates on or after January 25, 2015, for contracts submitted on or after January 25, 2015, and for intramural research projects generating genomic data on or after January 25, 2015. NIH has also issued a press release regarding the GDS Policy. A publication describing the use and impact of the NIH database for Genotypes and Phenotypes (dbGaP) data under the Policy for Sharing of Data Obtained in NIH Supported or Conducted Genome-Wide Association Studies, from 2007 through 2013, has been published in Nature Genetics.